BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0427.0004.p (290 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0795 [G] COG0395 ABC-type sugar transport system, permease com... 202 5e-52 SP0091 [G] COG0395 ABC-type sugar transport system, permease com... 202 6e-52 SPy1593 [G] COG0395 ABC-type sugar transport system, permease co... 196 3e-50 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 188 1e-47 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 185 8e-47 >BH0795 [G] COG0395 ABC-type sugar transport system, permease component Length = 322 Score = 202 bits (514), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 102/259 (39%), Positives = 160/259 (61%), Gaps = 4/259 (1%) Query: 35 TDEDAILKNGYSLFPEKFSLYAYKLIFTGGSQVMQSYGISIFVTIVGTALAILITSMAGY 94 T E ++ NGY + P ++S AY+ ++ S+V ++YG++IF+T+VGT +++ I ++ Y Sbjct: 63 TSEQSLAMNGYRIIPSEWSFDAYRYLWQMRSEVFRAYGVTIFITVVGTLMSVSIIALYAY 122 Query: 95 TLANKNVKYRNLLALYFFITMIFSAGIVPWYL-MNRSLGLTNNILALIIXXXXXXXXXXX 153 ++ K YR L F TM+FS G+VP+Y+ M + LGL N++ ALI+ Sbjct: 123 AISRKQFLYRKLFTFIAFFTMLFSGGMVPFYIVMTQFLGLKNSVWALILPMAVNAFYIII 182 Query: 154 XVRNFMNGVPDSLRESATIDGASDITIAFRIYLPLCKPVLATIALFYGLDYWNNWWNAIM 213 F VP+++ ESA IDGA + I F+I LPL P +ATIALF L YWN+W+NA++ Sbjct: 183 MRTFFQRSVPEAILESARIDGAGEFRIFFKIVLPLSIPGIATIALFSTLAYWNDWFNALL 242 Query: 214 LIDSKELYPLQFMLLQMQSEISMLNEMTMLAGSSDI---TLPSESVKMATAVVTIGPIIF 270 ID +L PLQ +L+++++ + + + ML+ + ++P +S +MA V+ PI Sbjct: 243 FIDDPKLVPLQSLLMRIENNLDFIRQNAMLSSQNSALLDSIPQDSARMAMVVIATLPIAL 302 Query: 271 LYPYLQKYFVKGLVIGSVK 289 YP+ QKYFVKGL IG VK Sbjct: 303 SYPFFQKYFVKGLTIGGVK 321 >SP0091 [G] COG0395 ABC-type sugar transport system, permease component Length = 307 Score = 202 bits (513), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 102/256 (39%), Positives = 154/256 (60%), Gaps = 1/256 (0%) Query: 35 TDEDAILKNGYSLFPEKFSLYAYKLIFTGGSQVMQSYGISIFVTIVGTALAILITSMAGY 94 TDE ++L+ GYS FP +F L ++ + +++Q+ IS+FVT+VGT + IT+ Y Sbjct: 51 TDEKSLLQYGYSFFPSQFGLDGFEFLAQFKDKILQALFISVFVTVVGTLTNVFITTTYAY 110 Query: 95 TLANKNVKYRNLLALYFFITMIFSAGIVPWYLM-NRSLGLTNNILALIIXXXXXXXXXXX 153 ++ KYR ++ ++M+F+AG+VP Y+M R L L + + ALI+ Sbjct: 111 AISRTTFKYRRFFTIFVLLSMLFNAGLVPGYIMVTRVLQLGDTVWALIVPMLLSPFNIIL 170 Query: 154 XVRNFMNGVPDSLRESATIDGASDITIAFRIYLPLCKPVLATIALFYGLDYWNNWWNAIM 213 F +P+++ ESA IDGAS+ I F+I LPL P +ATI L L +WN+W+NA++ Sbjct: 171 MRSFFKKTIPEAILESARIDGASEARIFFQICLPLSLPGIATITLLTALGFWNDWFNALL 230 Query: 214 LIDSKELYPLQFMLLQMQSEISMLNEMTMLAGSSDITLPSESVKMATAVVTIGPIIFLYP 273 I S LYPLQ++L+Q+Q + + + L G + LP E+ +MA VV PI LYP Sbjct: 231 YIKSDNLYPLQYLLMQIQQNMDYIAKAVGLIGQLGVALPKETGRMAMVVVATLPIAILYP 290 Query: 274 YLQKYFVKGLVIGSVK 289 + Q+YFVKGL IG VK Sbjct: 291 FFQRYFVKGLTIGGVK 306 >SPy1593 [G] COG0395 ABC-type sugar transport system, permease component Length = 308 Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 107/261 (40%), Positives = 158/261 (60%), Gaps = 6/261 (2%) Query: 35 TDEDAILKNGYSLFPEKFSLYAYKLIFTGG--SQVMQSYGISIFVTIVGTALAILITSMA 92 TDE ++ +GYS FP+ +S AY+ IF G ++M+S+GIS+F+T+VGT + +TS Sbjct: 47 TDESYLINHGYSFFPDVWSTKAYQYIFQGAMSHRIMRSFGISVFITVVGTFINTTMTSTY 106 Query: 93 GYTLANKNVKYRNLLALYFFITMIFSAGIVPWYLM-NRSLGLTNNILALIIXXXXXXXXX 151 Y ++ YR +Y ITM+F+ G+V YL+ + L L + + ALI+ Sbjct: 107 AYAISRPYFPYRRFFTVYALITMLFAPGMVANYLVVSNLLHLKDTVWALILPMALGPFGI 166 Query: 152 XXXVRNFMNGVPDSLRESATIDGASDITIAFRIYLPLCKPVLATIALFYGLDYWNNWWNA 211 F VPDS+ ESA +DGAS+ I +I LPL P +ATI+LF L YWN+W+NA Sbjct: 167 LVMRTFFKKTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATISLFSALTYWNDWFNA 226 Query: 212 IMLIDSKELYPLQFMLLQMQSEISMLNE---MTMLAGSSDITLPSESVKMATAVVTIGPI 268 ++ + S+ LYP+Q++L+++QS + L + M+ S +LP ESV+MA V+ PI Sbjct: 227 LLYVQSENLYPMQYLLMKIQSNLQALAQNAGMSAQMADSLASLPKESVRMAIVVIATLPI 286 Query: 269 IFLYPYLQKYFVKGLVIGSVK 289 YP+ QKYFV GL IG VK Sbjct: 287 ALTYPFFQKYFVGGLTIGGVK 307 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 101/256 (39%), Positives = 162/256 (63%), Gaps = 8/256 (3%) Query: 37 EDAILKNGYSLFPEKFSLYAYKLIFTGGSQVMQSYGISIFVTIVGTALAILITSMAGYTL 96 E + + + +FP+ F+L AYK +F+ + ++S G+SIF+T+VGTA+ + T Y L Sbjct: 46 EAELAQRSFFIFPKTFTLDAYKYVFSTPT-FLRSMGVSIFITVVGTAVQLFFTFTMAYPL 104 Query: 97 ANKNVKYRNLLALYFFITMIFSAGIVPWYLMNRSLGLTNNILALIIXXXXXXXXXXXXVR 156 A ++VK RNLL +M+FS G++P YL+ +SLGL + ALI+ ++ Sbjct: 105 AKRHVKGRNLLLNLVIFSMLFSGGMIPTYLVVKSLGLLDTYWALILPMAINPFNLII-IK 163 Query: 157 NFMNGVPDSLRESATIDGASDITIAFRIYLPLCKPVLATIALFYGLDYWNNWWNAIMLID 216 NF +P L ESA IDG S+I + +RI LPL KPV+AT ALFY + WN++++A++ I+ Sbjct: 164 NFFQQLPRELEESAKIDGCSEIGVFWRIALPLSKPVIATFALFYAVGIWNDFFHALLYIN 223 Query: 217 SKELYPLQFMLLQMQSEISMLNEMTMLAGSS--DITLPSESVKMATAVVTIGPIIFLYPY 274 +PLQ +L Q +++L+++T G + + P + +K+A V+ PI+ +YP+ Sbjct: 224 DSAKWPLQMVLRQ----VTILSDLTATNGDTMQNAVPPEQGIKLAVIVIATLPILAVYPF 279 Query: 275 LQKYFVKGLVIGSVKG 290 LQK+F KG++IGSVKG Sbjct: 280 LQKHFAKGMLIGSVKG 295 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 185 bits (469), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 101/254 (39%), Positives = 157/254 (61%), Gaps = 4/254 (1%) Query: 38 DAILKNGYSLFPEKFSLYAYKLIFTGGSQVMQSYGISIFVTIVGTALAILITSMAGYTLA 97 + +L+ + LFP FSL AY+ IF+ + +S ISI VT+VGT ++ +TS+ Y L+ Sbjct: 43 EEVLQKRFILFPTTFSLDAYRYIFST-DIIFRSLIISILVTVVGTGFSMFLTSLMAYGLS 101 Query: 98 NKNVKYRNLLALYFFITMIFSAGIVPWYLMNRSLGLTNNILALIIXXXXXXXXXXXXVRN 157 K++ R +L TM+FS G++P +L+ RSLGL + ALII ++N Sbjct: 102 RKDLDGRRVLMFLVVFTMLFSGGMIPTFLVVRSLGLLDTYWALIIPTAINAFNLII-LKN 160 Query: 158 FMNGVPDSLRESATIDGASDITIAFRIYLPLCKPVLATIALFYGLDYWNNWWNAIMLIDS 217 F +P+SL ESA IDG +D+ I FRI PL P +ATI+LFY + YWN + AI+ ++ Sbjct: 161 FFQNIPESLEESAKIDGCNDVGIFFRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLND 220 Query: 218 KELYPLQFMLLQMQSEIS-MLNEMTMLAGSSDITLPSESVKMATAVVTIGPIIFLYPYLQ 276 ++P+Q +L Q+ S M ++T L G+ + P +++KMA VV P++ +YP++Q Sbjct: 221 SSMWPIQVLLRQIVIMSSGMQGDLTEL-GAGFVMPPEQTIKMAVIVVATIPVLIVYPFIQ 279 Query: 277 KYFVKGLVIGSVKG 290 K+F KG ++GSVKG Sbjct: 280 KHFAKGALLGSVKG 293 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,270,472 Number of extensions: 587989 Number of successful extensions: 2745 Number of sequences better than 1.0e-05: 131 Number of HSP's gapped: 2572 Number of HSP's successfully gapped: 131 Length of query: 290 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 185 Effective length of database: 26,268,361 Effective search space: 4859646785 Effective search space used: 4859646785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)