BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0423.0003.p (1360 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc3941 [V] COG0534 Na+-driven multidrug efflux pump 75 8e-13 AGc3912 [T] COG2365 Protein tyrosine/serine phosphatase 75 8e-13 AGc3927_1 [T] COG4251 Bacteriophytochrome (light-regulated signa... 75 8e-13 AGc3961 [L] COG1573 Uracil-DNA glycosylase 75 8e-13 AGc3965 [K] COG0782 Transcription elongation factor 75 8e-13 >AGc3941 [V] COG0534 Na+-driven multidrug efflux pump Length = 1091 Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 20/346 (5%), Positives = 52/346 (15%), Gaps = 53/346 (15%) Query: 380 KAGRGMVDFSDLEHYCLQILRHADSEPGHSLPSDAAMEYR-DQ-FDEVLLDEYQDTNSVQ 437 A + + + + L+ E + ++ Sbjct: 427 TATTVSMGNGGVLLADSGAAVSG--------TRSDGKAFSIGGGQADALMLEKGSSFTLN 478 Query: 438 EEIVRLISRE-------SPGNR--FMVGDMKQSIYRFRLAEPGLFL----DKYKSFGSAA 484 + G + + L G + Sbjct: 479 AGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGSL 538 Query: 485 GGGSVIDLARNFRSRLEVVNAVNMIFRQIMDSTVAEISYDERAELVYGAHFPGAAEKGPD 544 G ++ + + + + S + Sbjct: 539 TGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALKLTGST-- 596 Query: 545 TYFAPELLLIDXXXXXXXXXXXXAEDGELPPQENEAM-ESETAQLEARAIVRRISQMTGM 603 + L + ++ T Q + Sbjct: 597 VLNGAI----------------DPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTS 640 Query: 604 SGGEPLMIYDKALKIMRPVVYGDIVILLRSARIWTPLMVEEL-RLEGIPAYGDQNKGYFQ 662 + V + P M + I K Sbjct: 641 T-----RTGKFVPA--TLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILN 693 Query: 663 ATEVEIALSLLQIVDNPRQDIPLAGVLRSPVVNLREE---ELAAVR 705 + S L Q + + + + A Sbjct: 694 LVNAGNSASGLATSGKGIQVVEAINGATTEEGAFVQGNRLQAGAFN 739 >AGc3912 [T] COG2365 Protein tyrosine/serine phosphatase Length = 346 Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 0/346 (0%), Positives = 0/346 (0%), Gaps = 53/346 (15%) Query: 380 KAGRGMVDFSDLEHYCLQILRHADSEPGHSLPSDAAMEYR-DQ-FDEVLLDEYQDTNSVQ 437 Sbjct: 427 -------- 478 Query: 438 EEIVRLISRE-------SPGNR--FMVGDMKQSIYRFRLAEPGLFL----DKYKSFGSAA 484 Sbjct: 479 538 Query: 485 GGGSVIDLARNFRSRLEVVNAVNMIFRQIMDSTVAEISYDERAELVYGAHFPGAAEKGPD 544 Sbjct: 539 -- 596 Query: 545 TYFAPELLLIDXXXXXXXXXXXXAEDGELPPQENEAM-ESETAQLEARAIVRRISQMTGM 603 Sbjct: 597 ---------------- 640 Query: 604 SGGEPLMIYDKALKIMRPVVYGDIVILLRSARIWTPLMVEEL-RLEGIPAYGDQNKGYFQ 662 Sbjct: 641 ------- 693 Query: 663 ATEVEIALSLLQIVDNPRQDIPLAGVLRSPVVNLREE---ELAAVR 705 Sbjct: 694 739 >AGc3927_1 [T] COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) Length = 731 Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 0/346 (0%), Positives = 0/346 (0%), Gaps = 53/346 (15%) Query: 380 KAGRGMVDFSDLEHYCLQILRHADSEPGHSLPSDAAMEYR-DQ-FDEVLLDEYQDTNSVQ 437 +L + + F Sbjct: 427 LLFFRKEIVQNLNWAGNPEKSYE--------TGPMGDRLTPRKSFAIWKETVRLQAQPWS 478 Query: 438 EEIVRLISRE-------SPGNR--FMVGDMKQSIYRFRLAEPGLFL----DKYKSFGSAA 484 E + + + + + + L E Sbjct: 479 EADREIAEAARIALVEVAFHHSELMAGERERAEVRQRMLNEELNHRVKNVLAIIKSLVGN 538 Query: 485 GGGSVIDLARNFRSRLEVVNAVNMIFRQIMDSTVAEISYDERAELVYGAHFPGAAEKGPD 544 L + + A++ QI+ D + P K Sbjct: 539 PSQEGKTLQEYVTALKGRIQALSFAHDQIIRGEGGGALRDLLEAELSPHRSPETTVKL-- 596 Query: 545 TYFAPELLLIDXXXXXXXXXXXXAEDGELPPQENEAM-ESETAQLEARAIVRRISQMTGM 603 + A+ A + + Sbjct: 597 EGPQIT----------------LDSRAFSVMALVLHELATNAAKYGALSQNGGQLHVRWD 640 Query: 604 SGGEPLMIYDKALKIMRPVVYGDIVILLRSARIWTPLMVEEL-RLEGIPAYGDQNKGYFQ 662 + S + ++ + + Sbjct: 641 V-----NENRDCEI--SWRETLLTTLPAPSRAGFGTALISRSIPYDLGGRSTIRYLPNGL 693 Query: 663 ATEVEIALSLLQIVDNPRQDIPLAGVLRSPVVNLREE---ELAAVR 705 E+ + + V + A L P REE Sbjct: 694 EAEILLPFRHVSSVSAAFETKTEAETLPQPRRYNREE 739 >AGc3961 [L] COG1573 Uracil-DNA glycosylase Length = 289 Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 0/346 (0%), Positives = 0/346 (0%), Gaps = 53/346 (15%) Query: 380 KAGRGMVDFSDLEHYCLQILRHADSEPGHSLPSDAAMEYR-DQ-FDEVLLDEYQDTNSVQ 437 Sbjct: 427 -------- 478 Query: 438 EEIVRLISRE-------SPGNR--FMVGDMKQSIYRFRLAEPGLFL----DKYKSFGSAA 484 Sbjct: 479 538 Query: 485 GGGSVIDLARNFRSRLEVVNAVNMIFRQIMDSTVAEISYDERAELVYGAHFPGAAEKGPD 544 Sbjct: 539 -- 596 Query: 545 TYFAPELLLIDXXXXXXXXXXXXAEDGELPPQENEAM-ESETAQLEARAIVRRISQMTGM 603 Sbjct: 597 ---------------- 640 Query: 604 SGGEPLMIYDKALKIMRPVVYGDIVILLRSARIWTPLMVEEL-RLEGIPAYGDQNKGYFQ 662 Sbjct: 641 ------- 693 Query: 663 ATEVEIALSLLQIVDNPRQDIPLAGVLRSPVVNLREE---ELAAVR 705 Sbjct: 694 739 >AGc3965 [K] COG0782 Transcription elongation factor Length = 289 Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 0/346 (0%), Positives = 0/346 (0%), Gaps = 53/346 (15%) Query: 380 KAGRGMVDFSDLEHYCLQILRHADSEPGHSLPSDAAMEYR-DQ-FDEVLLDEYQDTNSVQ 437 Sbjct: 427 -------- 478 Query: 438 EEIVRLISRE-------SPGNR--FMVGDMKQSIYRFRLAEPGLFL----DKYKSFGSAA 484 Sbjct: 479 538 Query: 485 GGGSVIDLARNFRSRLEVVNAVNMIFRQIMDSTVAEISYDERAELVYGAHFPGAAEKGPD 544 Sbjct: 539 -- 596 Query: 545 TYFAPELLLIDXXXXXXXXXXXXAEDGELPPQENEAM-ESETAQLEARAIVRRISQMTGM 603 Sbjct: 597 ---------------- 640 Query: 604 SGGEPLMIYDKALKIMRPVVYGDIVILLRSARIWTPLMVEEL-RLEGIPAYGDQNKGYFQ 662 Sbjct: 641 ------- 693 Query: 663 ATEVEIALSLLQIVDNPRQDIPLAGVLRSPVVNLREE---ELAAVR 705 Sbjct: 694 739 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 92,732,705 Number of extensions: 3737302 Number of successful extensions: 22270 Number of sequences better than 1.0e-05: 75 Number of HSP's gapped: 22281 Number of HSP's successfully gapped: 83 Length of query: 1360 Length of database: 38,378,431 Length adjustment: 119 Effective length of query: 1241 Effective length of database: 24,653,685 Effective search space: 30595223085 Effective search space used: 30595223085 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)