BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0422.0020.p
         (76 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3564 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases   110   5e-25
SA0723 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases   109   9e-25
CAC2640 [OU] COG0740 Protease subunit of ATP-dependent Clp prote...   109   1e-24
BS_clpP [OU] COG0740 Protease subunit of ATP-dependent Clp prote...   105   2e-23
alr3683 [OU] COG0740 Protease subunit of ATP-dependent Clp prote...   102   1e-22

>BH3564 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases
          Length = 194

 Score =  110 bits (275), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 62/72 (86%)

Query: 1   MIHQPLGGVQGQASDIWIHTDWILKTRQKLNQIYVDRTGQPLEKIERDTDRDNFMSAEEA 60
           MIHQPLGG +GQASDI IHT  IL+ R+ LN+I  +RTGQPLE+I +DTDRDNFM+AE+A
Sbjct: 121 MIHQPLGGTRGQASDIEIHTRRILEMRETLNRILAERTGQPLEQIAKDTDRDNFMTAEKA 180

Query: 61  KEYGLIDQVLSS 72
           +EYGLID+V+ +
Sbjct: 181 REYGLIDKVIET 192


>SA0723 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases
          Length = 195

 Score =  109 bits (273), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 62/70 (88%)

Query: 1   MIHQPLGGVQGQASDIWIHTDWILKTRQKLNQIYVDRTGQPLEKIERDTDRDNFMSAEEA 60
           MIHQPLGG QGQA++I I  + ILKTR+KLN+I  +RTGQ +EKI++DTDRDNF++AEEA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEA 180

Query: 61  KEYGLIDQVL 70
           KEYGLID+V+
Sbjct: 181 KEYGLIDEVM 190


>CAC2640 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases
          Length = 193

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 62/71 (87%)

Query: 1   MIHQPLGGVQGQASDIWIHTDWILKTRQKLNQIYVDRTGQPLEKIERDTDRDNFMSAEEA 60
           MIHQPLGG +GQA+DI IH   IL+ ++KLN IY +RTG+P+E IE+DTDRD+F+SAEEA
Sbjct: 121 MIHQPLGGFKGQATDIGIHAQRILEIKKKLNSIYSERTGKPIEVIEKDTDRDHFLSAEEA 180

Query: 61  KEYGLIDQVLS 71
           KEYGLID+V++
Sbjct: 181 KEYGLIDEVIT 191


>BS_clpP [OU] COG0740 Protease subunit of ATP-dependent Clp proteases
          Length = 197

 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 57/71 (80%)

Query: 1   MIHQPLGGVQGQASDIWIHTDWILKTRQKLNQIYVDRTGQPLEKIERDTDRDNFMSAEEA 60
           MIHQPLGG QGQA++I I    IL  R KLN++  +RTGQPLE IERDTDRDNF SAEEA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEA 180

Query: 61  KEYGLIDQVLS 71
            EYGLID++L+
Sbjct: 181 LEYGLIDKILT 191


>alr3683 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases
          Length = 359

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 3/71 (4%), Positives = 7/71 (9%)

Query: 1   MIHQPLGGVQGQASDIWIHTDWILKTRQKLNQIYVDRTGQPLEKIERDTDRDNFMSAEEA 60
             +                       +Q                I        +  +   
Sbjct: 147 CKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFD 206

Query: 61  KEYGLIDQVLS 71
                I     
Sbjct: 207 WVRPGIILYGV 217


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,790,580
Number of extensions: 197879
Number of successful extensions: 1701
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 1701
Number of HSP's successfully gapped: 48
Length of query: 76
Length of database: 38,378,431
Length adjustment: 47
Effective length of query: 29
Effective length of database: 32,957,733
Effective search space: 955774257
Effective search space used: 955774257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)