BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0422.0011.p (221 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value MG335.2 [M] COG0463 Glycosyltransferases involved in cell wall b... 102 4e-22 SMc00581 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase 50 2e-06 SA0613 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases 50 2e-06 DR0294 [H] COG1488 Nicotinic acid phosphoribosyltransferase 50 2e-06 SA0634 [J] COG1670 Acetyltransferases, including N-acetylases of... 50 2e-06 >MG335.2 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 191 Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 59/146 (40%), Positives = 86/146 (58%), Gaps = 3/146 (2%) Query: 5 NAEFIISAVGPDQYPVDALPEIALAGRSNVGKSSLINRMINRKNLARTSSTPGKTQHMNY 64 +A F+ SA P D +PEI GRSNVGKSSLIN +K LA+TS+TPG+TQ +NY Sbjct: 2 DAHFLKSASDLKDCPQDNIPEICFMGRSNVGKSSLINAFF-KKKLAKTSATPGRTQLLNY 60 Query: 65 YRVNESMYFVDFPGYGYAKVSKTQRASWGKMVEKYLAERDTLKLVLLIVDLRHPPTGNDK 124 + + FVD PGYG+AK++K ++ ++ ++L R L V+LIVD T D+ Sbjct: 61 FEYKDKR-FVDLPGYGFAKINKNKKDFITNLLTQFLNFRSNLVGVVLIVD-SGVVTVQDQ 118 Query: 125 MMFDWLKHYDLPLCVVATKADKIPKT 150 + + L +VA K DK+ ++ Sbjct: 119 EVVKIILQTGLNFLIVANKFDKLNQS 144 >SMc00581 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase Length = 316 Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 10/172 (5%), Positives = 26/172 (15%), Gaps = 15/172 (8%) Query: 26 IALAGRSNVGKSSLINRMINRKNLARTSSTPGKTQHMNYYRVNESMY---FVDFPGYGYA 82 L+ + G S+ + +A ++ + + G Sbjct: 11 RLLSAVALAGALSVAAGTVTTA-MAASTVEVVVNSTVITSGDVAKRVAFLKLQRQSGGA- 68 Query: 83 KVSKTQRASWGKMVEKYLAERDTLKLVLLIVD-LRHPPTGNDKMMFDWLKHYDLPLCVVA 141 + V K + V + L Sbjct: 69 ---AEAKQQLVDEVLKRAEIARVQQSVSTDEVDAAFAR--FAAGNKLSPEQLGKILDQAG 123 Query: 142 TKADKI-PKTRWPKHIKIMKQELGVLPGDNFISFSSEIGLGRDELWELIERY 192 D + ++ + Sbjct: 124 VGVDHFKQYIAVQMSWPRVVNFRYGS---ASRLSGGDLVKRMMQGGGNKPVT 172 >SA0613 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Length = 307 Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 6/172 (3%), Positives = 20/172 (11%), Gaps = 15/172 (8%) Query: 26 IALAGRSNVGKSSLINRMINRKNLARTSSTPGKTQHMNYYRVNESMY---FVDFPGYGYA 82 G+ + + + Sbjct: 11 TGYIGKYLSEVIENDAELFTIS-KYPDNKKTDDVEMTWIQCDIFHYEQVVAAMNQIDIA- 68 Query: 83 KVSKTQRASWGKMVEKYLAERDTLKLVLLIVD-LRHPPTGNDKMMFDWLKHYDLPLCVVA 141 + + L L+ N ++ + Sbjct: 69 ---VFFIDPTKNSAKITQSSARDLTLIAADNFGRAAAI--NQVKKVIYIPGSRYDNETIE 123 Query: 142 TKADKI-PKTRWPKHIKIMKQELGVLPGDNFISFSSEIGLGRDELWELIERY 192 P K + + + + Sbjct: 124 RLGAYGTPVETTNLVFKRSLVNVELQ---VSKYDDVRSTMKVVLPKGWTLKN 172 >DR0294 [H] COG1488 Nicotinic acid phosphoribosyltransferase Length = 462 Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 13/172 (7%), Positives = 29/172 (16%), Gaps = 15/172 (8%) Query: 26 IALAGRSNVGKSSLINRMINRKNLARTSSTPGKTQHMNYYRVNESMY---FVDFPGYGYA 82 I R + S G+ ++ + + Sbjct: 11 ILDTDSYKSSHFLQYPPGTTRL-FSYLESRGGRYPVTRFFGLQYILSRYLTRRVTMEMV- 68 Query: 83 KVSKTQRASWGKMVEKYLAERDTLKLVLLIVD-LRHPPTGNDKMMFDWLKHYDLPLCVVA 141 + RA E + E + + H L C Sbjct: 69 ---EEARAVIEAHGEPFPYEGWRRVVEVHGGKLPLEIR--AVPEGTLVPIHNVLMSCTNT 123 Query: 142 TKADKI-PKTRWPKHIKIMKQELGVLPGDNFISFSSEIGLGRDELWELIERY 192 P +++ I ++ + Sbjct: 124 DPELPWLPGWFETMLMRVWYPTTVCT---QSWHIREIIRQALEDTSDRAAEE 172 >SA0634 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 180 Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 8/172 (4%), Positives = 38/172 (22%), Gaps = 15/172 (8%) Query: 26 IALAGRSNVGKSSLINRMINRKNLARTSSTPGKTQHMNYYRVNESMY---FVDFPGYGYA 82 + ++ +N + + S + ++ ++ + F Sbjct: 11 LRDWHEDDLLPFQKMNANYDVR-KYFPSLLSYRRSELDMRTMDAVIKDYGIGLFAVEDK- 68 Query: 83 KVSKTQRASWGKMVEKYLAERDTLKLVLLIVD-LRHPPTGNDKMMFDWLKHYDLPLCVVA 141 ++ + + D L + + + +A Sbjct: 69 ---ESHQWIGFIGLNYIPETSDYPFKELPLYEIGWRLL--PEFWGKGLATEGAKATLKLA 123 Query: 142 TKADKI-PKTRWPKHIKIMKQELGVLPGDNFISFSSEIGLGRDELWELIERY 192 + + + K ++ + + + + L + Sbjct: 124 EEHQIYDVYSFTAEANKASQRVMEKI---GMTVYDHFELPNLSKYHLLKRQV 172 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,346,682 Number of extensions: 652794 Number of successful extensions: 10934 Number of sequences better than 1.0e-05: 9581 Number of HSP's gapped: 20530 Number of HSP's successfully gapped: 9581 Length of query: 221 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 119 Effective length of database: 26,614,363 Effective search space: 3167109197 Effective search space used: 3167109197 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 114 (48.5 bits)