BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0422.0001.p
         (91 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3716 [M] COG2148 Sugar transferases involved in lipopolysaccha...    84   6e-17
SP0350 [M] COG2148 Sugar transferases involved in lipopolysaccha...    64   7e-11
CC1486 [M] COG2148 Sugar transferases involved in lipopolysaccha...    62   2e-10
BS_yvfC [M] COG2148 Sugar transferases involved in lipopolysacch...    52   3e-07

>BH3716 [M] COG2148 Sugar transferases involved in lipopolysaccharide
           synthesis
          Length = 207

 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/55 (74%), Positives = 44/55 (80%)

Query: 1   LTGWAQINGRDELPIEEKAKLDGEYTVNITFIFDLKVFVRTVLSVLKSDGVREGA 55
           LTGWAQINGRDELPIE KAKLDGEY  NI F  D+K FV T+ SVL+SDGV EG 
Sbjct: 139 LTGWAQINGRDELPIEVKAKLDGEYVQNIGFWMDVKCFVGTIWSVLRSDGVVEGG 193


>SP0350 [M] COG2148 Sugar transferases involved in lipopolysaccharide
           synthesis
          Length = 211

 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%)

Query: 1   LTGWAQINGRDELPIEEKAKLDGEYTVNITFIFDLKVFVRTVLSVLKSDGVREGADDQD 59
           LTGWAQINGRD L +E K +LDG Y  +++ I D++  V+T+  VLK  G+ EG+  ++
Sbjct: 152 LTGWAQINGRDTLSVEMKTELDGYYVKHLSLIMDIRCIVKTIPYVLKRKGIVEGSGKKE 210


>CC1486 [M] COG2148 Sugar transferases involved in lipopolysaccharide
           synthesis
          Length = 186

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 36/51 (70%)

Query: 1   LTGWAQINGRDELPIEEKAKLDGEYTVNITFIFDLKVFVRTVLSVLKSDGV 51
           +TGWAQINGRDEL I +K  LD EY    + +FDL+V V TV+ VL + GV
Sbjct: 134 VTGWAQINGRDELSIADKVALDAEYLRRRSLLFDLRVLVSTVIPVLTARGV 184


>BS_yvfC [M] COG2148 Sugar transferases involved in lipopolysaccharide
           synthesis
          Length = 202

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 36/53 (67%)

Query: 1   LTGWAQINGRDELPIEEKAKLDGEYTVNITFIFDLKVFVRTVLSVLKSDGVRE 53
           +TGWAQINGR+ +  E+K +LD  Y  N +F  DLK+   TV  VL S+G+++
Sbjct: 133 ITGWAQINGRNAISWEKKFELDVWYVDNWSFFLDLKILCLTVRKVLVSEGIQQ 185


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,021,875
Number of extensions: 202359
Number of successful extensions: 220
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 4
Length of query: 91
Length of database: 38,378,431
Length adjustment: 61
Effective length of query: 30
Effective length of database: 31,343,057
Effective search space: 940291710
Effective search space used: 940291710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)