BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0033.p (234 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1186 [V] COG1136 ABC-type antimicrobial peptide transport sys... 286 2e-77 SPy1257 [V] COG1136 ABC-type antimicrobial peptide transport sys... 283 1e-76 L110431 [V] COG1136 ABC-type antimicrobial peptide transport sys... 267 9e-72 SP1653 [V] COG1136 ABC-type antimicrobial peptide transport syst... 261 7e-70 AF1819 [V] COG1136 ABC-type antimicrobial peptide transport syst... 248 7e-66 >lin1186 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 286 bits (732), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 10/231 (4%), Positives = 36/231 (15%) Query: 4 FIKIEKVTRQYETGEMTVTAVDKMDFTINKGEFVVILGPSGSGKSTLLNLLGGMDQATSG 63 I + + G + + + + + Sbjct: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 64 NIIVDGANIAGFSIDQLCNYRRNDIGFVFQFYNLIPNLTAKENVEVTRKICKNVLDSTSV 123 + + I + Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 124 LNSVGLGGRLHHFPAELSGGEQQRVSIARAICKNPKLLLCDEPTGALDSVTGALIMATLW 183 + + S+ + ++ ++ T ++ L Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 184 EMCKKNGQTVIIVTHNAAIAETADKVIRLKDGKVLEVQIHKEPLPMSEVSW 234 E + + G + +Q + + E Sbjct: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 >SPy1257 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 283 bits (725), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 10/231 (4%), Positives = 36/231 (15%) Query: 4 FIKIEKVTRQYETGEMTVTAVDKMDFTINKGEFVVILGPSGSGKSTLLNLLGGMDQATSG 63 I + + G + + + + + Sbjct: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 64 NIIVDGANIAGFSIDQLCNYRRNDIGFVFQFYNLIPNLTAKENVEVTRKICKNVLDSTSV 123 + + I + Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 124 LNSVGLGGRLHHFPAELSGGEQQRVSIARAICKNPKLLLCDEPTGALDSVTGALIMATLW 183 + + S+ + ++ ++ T ++ L Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 184 EMCKKNGQTVIIVTHNAAIAETADKVIRLKDGKVLEVQIHKEPLPMSEVSW 234 E + + G + +Q + + E Sbjct: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 >L110431 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 267 bits (683), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 10/231 (4%), Positives = 36/231 (15%) Query: 4 FIKIEKVTRQYETGEMTVTAVDKMDFTINKGEFVVILGPSGSGKSTLLNLLGGMDQATSG 63 I + + G + + + + + Sbjct: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 64 NIIVDGANIAGFSIDQLCNYRRNDIGFVFQFYNLIPNLTAKENVEVTRKICKNVLDSTSV 123 + + I + Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 124 LNSVGLGGRLHHFPAELSGGEQQRVSIARAICKNPKLLLCDEPTGALDSVTGALIMATLW 183 + + S+ + ++ ++ T ++ L Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 184 EMCKKNGQTVIIVTHNAAIAETADKVIRLKDGKVLEVQIHKEPLPMSEVSW 234 E + + G + +Q + + E Sbjct: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 >SP1653 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 261 bits (667), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 10/231 (4%), Positives = 36/231 (15%) Query: 4 FIKIEKVTRQYETGEMTVTAVDKMDFTINKGEFVVILGPSGSGKSTLLNLLGGMDQATSG 63 I + + G + + + + + Sbjct: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 64 NIIVDGANIAGFSIDQLCNYRRNDIGFVFQFYNLIPNLTAKENVEVTRKICKNVLDSTSV 123 + + I + Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 124 LNSVGLGGRLHHFPAELSGGEQQRVSIARAICKNPKLLLCDEPTGALDSVTGALIMATLW 183 + + S+ + ++ ++ T ++ L Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 184 EMCKKNGQTVIIVTHNAAIAETADKVIRLKDGKVLEVQIHKEPLPMSEVSW 234 E + + G + +Q + + E Sbjct: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 >AF1819 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 248 bits (632), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 17/231 (7%), Positives = 39/231 (16%) Query: 4 FIKIEKVTRQYETGEMTVTAVDKMDFTINKGEFVVILGPSGSGKSTLLNLLGGMDQATSG 63 + + E + +D K + T + + Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 64 NIIVDGANIAGFSIDQLCNYRRNDIGFVFQFYNLIPNLTAKENVEVTRKICKNVLDSTSV 123 V A +D YR + + + T + + Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 Query: 124 LNSVGLGGRLHHFPAELSGGEQQRVSIARAICKNPKLLLCDEPTGALDSVTGALIMATLW 183 + G Q S + + + + + + Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 184 EMCKKNGQTVIIVTHNAAIAETADKVIRLKDGKVLEVQIHKEPLPMSEVSW 234 + Q A V + M Sbjct: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG 231 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,536,240 Number of extensions: 649724 Number of successful extensions: 19004 Number of sequences better than 1.0e-05: 2142 Number of HSP's gapped: 15856 Number of HSP's successfully gapped: 2317 Length of query: 234 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 131 Effective length of database: 26,499,029 Effective search space: 3471372799 Effective search space used: 3471372799 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)