BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0026.p (327 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0321 [TK] COG0745 Response regulators consisting of a CheY-li... 196 4e-50 STM1655 [LKJ] COG0513 Superfamily II DNA and RNA helicases 187 2e-47 TM1655 [TK] COG0745 Response regulators consisting of a CheY-lik... 187 2e-47 BH0820 [TK] COG0745 Response regulators consisting of a CheY-lik... 187 2e-47 CAC0564 [TK] COG0745 Response regulators consisting of a CheY-li... 184 1e-46 >CAC0321 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 230 Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 98/231 (42%), Positives = 144/231 (62%), Gaps = 8/231 (3%) Query: 103 ISTILVVDDDQSIVELLRDFLENENFHVITACDSAEALALFQQSSIHCIVLDIMMPGQNG 162 + IL+++D+ SI EL +D+LE NF V L ++ + I+LD+M+P +G Sbjct: 1 MKKILIIEDETSIAELEKDYLELSNFKVDIEVSGKTGLEAAKEKNYELIILDLMLPEIDG 60 Query: 163 FELCRQIRAESNIPILFLSARSDDVDKIRGLTLGGDDYIVKSASPGEIVARVKAVLRRF- 221 FE+C+QIR N PIL +SA+ +D+DKIRGL LG DDY+ K SP E+VARVKA + R+ Sbjct: 61 FEICKQIRKIKNTPILMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHISRYE 120 Query: 222 ----ASQKQMDGRILDYGRIKLNLSTREVIVEGKNVDLTPREYELLRLFVEHPRHVFSYE 277 +S K +D I G + +N ++R+V V GK T +E++LL ++P VFS E Sbjct: 121 RLVNSSNKNLDDEIEIRG-LNINKASRKVFVNGKESQFTAKEFDLLVFLAQNPDRVFSKE 179 Query: 278 QLIVKFW--NGVGDKHTIRVHLSRLREKIESDPNQPKYLVNVWGVGYRFEG 326 +L K W + G+ T+ VH+ ++REKIE D + P+Y+ VWG GYRF G Sbjct: 180 ELFDKIWGMDSFGEIATVTVHIKKIREKIEKDTSNPEYIETVWGAGYRFRG 230 >STM1655 [LKJ] COG0513 Superfamily II DNA and RNA helicases Length = 457 Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 17/237 (7%), Positives = 51/237 (21%), Gaps = 9/237 (3%) Query: 96 GGIFMSEISTILVVDDDQSIVELLRDFLENENFHVITACDSAEALALFQQSSIHCIVLDI 155 + + + L + +E+ + +A +++ + L Sbjct: 5 STLNVLP-AAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLH 63 Query: 156 MMPGQNGFELCRQIRAE---SNIPILFLSARSDDVDKIRGLTLGGDDYIVKSASPGEIVA 212 + + ++ L + + + LTL G + Sbjct: 64 RIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAP 123 Query: 213 RVKAVLRRFAS---QKQMDGRILDYGRIKLNLSTREVIVEGKNVDLTPREYELLRLFVEH 269 + QK+ + + + +D R R + Sbjct: 124 HIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLF 183 Query: 270 PRHVFSYEQLIVKFW--NGVGDKHTIRVHLSRLREKIESDPNQPKYLVNVWGVGYRF 324 I + + L + ++ K + + Sbjct: 184 SATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHEKISLLQTLLSQHQ 240 >TM1655 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 247 Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/237 (43%), Positives = 148/237 (62%), Gaps = 9/237 (3%) Query: 96 GGIFMSEISTILVVDDDQSIVELLRDFLENENFHVITACDSAEALALFQQSSIHCIVLDI 155 GG M++ ILVVDDD +I+EL+ L E + V+ A D EAL + + ++DI Sbjct: 5 GGSKMAK-KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDI 63 Query: 156 MMPGQNGFELCRQIRAE---SNIPILFLSARSDDVDKIRGLTLGGDDYIVKSASPGEIVA 212 M+PG +GFEL R+IR+ N P++FLSA+ ++ DK+ GL LG DDYI K S E++A Sbjct: 64 MLPGIDGFELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLA 123 Query: 213 RVKAVLRRFAS---QKQMDGRILDYGRIKLNLSTREVIVEGKNVDLTPREYELLRLFVEH 269 RVKA+ RR ++ K+ + + +++++ EV V GK V+LTP E+ELLR E+ Sbjct: 124 RVKAIFRRLSTATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAEN 183 Query: 270 PRHVFSYEQLIVKFW--NGVGDKHTIRVHLSRLREKIESDPNQPKYLVNVWGVGYRF 324 VFS + L+ K W + GD T+ VH+ RLR KIE DP+ PKY++ V G GY+F Sbjct: 184 EGKVFSRDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 240 >BH0820 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 234 Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 96/226 (42%), Positives = 145/226 (64%), Gaps = 8/226 (3%) Query: 106 ILVVDDDQSIVELLRDFLENENFHVITACDSAEALALFQQSSIHCIVLDIMMPGQNGFEL 165 IL+++DD SI E++++ L+ E +HV A D EA LF+Q++ ++LD+M+P +NG + Sbjct: 6 ILLIEDDVSISEMVKEHLQLEGYHVCCAFDGEEATRLFEQNTYDLVLLDLMLPRRNGIDC 65 Query: 166 CRQIRAESNIPILFLSARSDDVDKIRGLTLGGDDYIVKSASPGEIVARVKAVLRRF---- 221 + IR +S +P+L +SA+ DVDK GL G DDYI K S E+ ARVKA +RR Sbjct: 66 LQWIRTKSVVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELTARVKAAIRRTVNYA 125 Query: 222 -ASQKQMDGRILDYGRIKLNLSTREVIVEGKNVDLTPREYELLRLFVEHPRHVFSYEQLI 280 ASQ + RI + + LS+ V +G+ + LT +E+++L+LFV HP+ VF+ EQL Sbjct: 126 QASQSAENERI-KIHELVVELSSFTVKKKGEEIKLTAKEFQILKLFVTHPKKVFTKEQLY 184 Query: 281 VKFWNG--VGDKHTIRVHLSRLREKIESDPNQPKYLVNVWGVGYRF 324 WN D++ I VH+ RLREKIE P++P+Y+ +WG+GYR Sbjct: 185 RSVWNDDYYSDENVINVHIRRLREKIEDTPSKPQYIKTIWGIGYRM 230 >CAC0564 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 233 Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 95/229 (41%), Positives = 145/229 (63%), Gaps = 5/229 (2%) Query: 102 EISTILVVDDDQSIVELLRDFLENENFHVITACDSAEALALFQQSSIHCIVLDIMMPGQN 161 E T+LVVDD++ I +L+ +L NE F+VI A + EAL + + + + ++LDIMMP + Sbjct: 2 ESRTVLVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEILKDTEVQLVLLDIMMPKMD 61 Query: 162 GFELCRQIRAESNIPILFLSARSDDVDKIRGLTLGGDDYIVKSASPGEIVARVKAVLRRF 221 G C +IR + N PI+ LSA+ +D+DKI GLT G DDYI K +P E++ARVK+ +RR+ Sbjct: 62 GITTCMKIREDKNTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIRRY 121 Query: 222 A---SQKQMDGRILDYGRIKLNLSTREVIVEGKNVDLTPREYELLRLFVEHPRHVFSYEQ 278 S + + ++ G I +N T EV + + V LT RE+++L L + VFS E+ Sbjct: 122 TKLNSTYESNSANIEVGEITINTDTHEVKIGDRTVSLTKREFDILVLLSRNKGVVFSTEK 181 Query: 279 LIVKFWN-GVGDKH-TIRVHLSRLREKIESDPNQPKYLVNVWGVGYRFE 325 + W+ D H T+ VH+ ++REKIE +P +P+Y+ VWGVGY+ E Sbjct: 182 IYESVWHEEFYDCHNTVMVHIRKIREKIEKNPRKPEYIKTVWGVGYKIE 230 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,479,805 Number of extensions: 930557 Number of successful extensions: 3085 Number of sequences better than 1.0e-05: 404 Number of HSP's gapped: 2688 Number of HSP's successfully gapped: 405 Length of query: 327 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 220 Effective length of database: 26,037,693 Effective search space: 5728292460 Effective search space used: 5728292460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 116 (49.3 bits)