BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0023.p (301 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0657 [O] COG0492 Thioredoxin reductase 262 4e-70 DR0412 [O] COG0492 Thioredoxin reductase 188 7e-48 SMc01159 [O] COG0492 Thioredoxin reductase 158 1e-38 AGc4053 [ET] COG0834 ABC-type amino acid transport/signal transd... 154 2e-37 AGc4051_2 [T] COG2200 FOG: EAL domain 154 2e-37 >BH0657 [O] COG0492 Thioredoxin reductase Length = 346 Score = 262 bits (670), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 22/295 (7%), Positives = 49/295 (16%), Gaps = 2/295 (0%) Query: 4 DCAIIGGGPAGLNAALVLGRARRSVALFDNSQPRNAVTHASHGFITRDGVTPAEFRRIAY 63 + + GL + + A + E + + Sbjct: 7 PHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTE 66 Query: 64 EEVQGYPSVELLPWEVTGIRRSDNRFVVVTSTGRQIEARKLLVTTGLREVFPDIPGLHEC 123 V + + ++ + R +A Sbjct: 67 TYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYL 126 Query: 124 YGTSLFNCPYCDGWELRDQPLIVVSENSGVFHMAKLLYTWSKDLVICTNGHAVLDVEQKQ 183 + + S + + + Sbjct: 127 DLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGV 186 Query: 184 LLKSRNIDVVEQAVTMFIGHEGKLRQVEFADGTRIERTGGFVTPEWKPKASFKGSLGYEV 243 + D + + I + L F G V F G + Sbjct: 187 MRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYL 246 Query: 244 NEFGGIVTTNEWGKSTIPGVYAAGDAAYVMPSQLIYAAADGSKAAVGINMELAEE 298 N S V + + A G A + + Sbjct: 247 NG-AKPAGARNTLFSRFTRYSGEQTQKAVA-AYVDIARRHGLDPAQMALAFVRRQ 299 >DR0412 [O] COG0492 Thioredoxin reductase Length = 346 Score = 188 bits (478), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 22/297 (7%), Positives = 55/297 (18%), Gaps = 5/297 (1%) Query: 3 YDCAIIGGGPAGLNAALVLGRARRSVALFDNSQPRNAVTHASHGFITRDGVTPAEFRRIA 62 + G + V + E Sbjct: 12 EVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGN 71 Query: 63 YEEVQGYPSVELLPWEVTGIRRSDNRFVVVTSTGRQIEARKLLVTTGLREVFPDIPGLHE 122 + G +L+ +N + + + + L+ + D L++ Sbjct: 72 WLAKHGS-REKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQ 130 Query: 123 CYGTSLFNCPYCDGWELRDQPLIVVSENSGVFHMAKLLYTWSKDLVICTNGHAVLDVEQK 182 + + VS + +A+ + +N A + Sbjct: 131 VHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYL 190 Query: 183 QLLKSRNIDVVEQAVTMFIGHEGKLRQVEFADGTRIERTGGFVTPEWKPKASFKGSLGYE 242 L ++ + + + + G Sbjct: 191 HLADKHDLPRIVTIQNPYSLLNRS--FEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNG 248 Query: 243 VNEFGGIVTTNEWGKSTIPGVYAAGDAAYVMPSQLIYAAADGSKAAVGINMELAEED 299 G T + G A D ++ A+ Sbjct: 249 AKPAGARN-TLFSRFTRYSGEQTQKAVAAY-VDIARRHGLDPAQMALAFVRRQPFVA 303 >SMc01159 [O] COG0492 Thioredoxin reductase Length = 346 Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 16/297 (5%), Positives = 45/297 (15%), Gaps = 8/297 (2%) Query: 1 LSYDCAIIGGGPAGLNAALVLGRARRSVALFDNSQPRNAVTHASHGFITRDGVTPAEFRR 60 + + + G + A D + + + Sbjct: 6 IPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLT 65 Query: 61 IAYEEVQGYPSVELLPWEVTGIRRSDNRFVVVTSTGRQIEARKLLVTTGLREVFPDIPGL 120 Y + + + L + + Sbjct: 66 ETYVGNWLAKHGSREKLIIASKVS-GPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTD 124 Query: 121 HECYGTSLFNCPYCDGWELRDQPLIVVSENSGVFHMAKLLYTWSKDLVICTNGHAVLDVE 180 + + + + + + L + + I G + + Sbjct: 125 YLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN-ETA 183 Query: 181 QKQLLKSRNIDVVEQAVTMFIGHEGKLRQVEFADGTRIERTGGFVTPEWKPKASFKGSLG 240 + D + + + S G Sbjct: 184 FGVMRYLHLADKHDLPRIVT---IQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGT 240 Query: 241 --YEVNEFGGIVTTNEWGKSTIPGVYAAGDAAYVMPSQLIYAAADGSKAAVGINMEL 295 + S V + A G A + Sbjct: 241 LTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAY-VDIARRHGLDPAQMALAFV 296 >AGc4053 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 297 Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 91/272 (33%), Positives = 140/272 (51%), Gaps = 7/272 (2%) Query: 1 LSYDCAIIGGGPAGLNAALVLGRARRSVALFDNSQPRNAVTHASHGFITRDGVTPAEFRR 60 + +D IIGG AGL+AAL LGRAR+++ L D + RN SHGF+ +DG P E Sbjct: 1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIA 60 Query: 61 IAYEEVQGYPSVELLPWEVTGIRRSDNRFVVVTSTGRQIEARKLLVTTGLREVFPDIPGL 120 A +++ YP++ + VT + S F+V GR+ A +L++ G+ + P+I GL Sbjct: 61 EARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGL 120 Query: 121 HECYGTSLFNCPYCDGWELRDQPLIVVSENSGVFHMAKLLYTWSKDLVICTNGHAVLDVE 180 E +G+++F+CPYC G+EL + V++ + H A +L W + TNG D + Sbjct: 121 RERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVEPDAD 179 Query: 181 QKQLLKSRNIDVVEQAVTMFIGHEGKLRQVEFADGTRIERTGGFVTPEWKPKASFKGSLG 240 Q LL +R + V + GH V ADG I G F P+ + + LG Sbjct: 180 QHALLAARGVRVETTRIREIAGHA----DVVLADGRSIALAGLFTQPKLRITVDWIEKLG 235 Query: 241 YEVNE--FGGIVTTNEWGKSTIPGVYAAGDAA 270 V E G + T+ ++T G++A GD A Sbjct: 236 CAVEEGPMGSTIVTDPMKQTTARGIFACGDVA 267 >AGc4051_2 [T] COG2200 FOG: EAL domain Length = 282 Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 11/272 (4%), Positives = 48/272 (17%), Gaps = 7/272 (2%) Query: 1 LSYDCAIIGGGPAGLNAALVLGRARRSVALFDNSQPRNAVTHASHGFITRDGVTPAEFRR 60 + + + ++ T + GF + + Sbjct: 1 VFDSSIMDRAREHAELERDIAQALSEDWFEAYFQPIQDLATGQTAGFEALLRLNHPDKGL 60 Query: 61 IAYEEVQGYPSVELLPWEVTGIRRSDNRFVVVTSTGRQIEARKLLVTTGLREVFPDIPGL 120 ++ + + + + + + + + F Sbjct: 61 LSPAAIVSLAEENGTIQRIGNLILDQSIANLARLSRLPGMDQTYVAVNFSPLQFEPGLPT 120 Query: 121 HECYGTSLFNCPYCDGWELRDQPLIVVSENSGVFHMAKLLYTWSKDLVICTNGHAVLDVE 180 + +I+ + + + + + G + Sbjct: 121 RIAGVLHRHGILPARLVIEITEAVIMKDDPQIRAILNAIHQLGC-RIALDDFGTGYSSLS 179 Query: 181 QKQLLKSRNIDVVEQAVTMFIGHEGKLRQVEFADGTRIERTGGFVTPEWKPKASFKGSLG 240 + + + + ++ + +G Sbjct: 180 YLSRFPVDIVKIDQSFTRSICDDT----VDIRQRSRMLVEGIAAISHKMNCTVIAEGVET 235 Query: 241 YEVNE--FGGIVTTNEWGKSTIPGVYAAGDAA 270 E + + P AA Sbjct: 236 EEQKDLLTDMGADFGQGYYFARPQPVQRLIAA 267 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,095,451 Number of extensions: 988142 Number of successful extensions: 2709 Number of sequences better than 1.0e-05: 40 Number of HSP's gapped: 2659 Number of HSP's successfully gapped: 40 Length of query: 301 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 195 Effective length of database: 26,153,027 Effective search space: 5099840265 Effective search space used: 5099840265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)