BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0420.0017.p
         (413 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2588 [S] COG3314 Uncharacterized protein conserved in bacteria      268   8e-72
SA0308 [S] COG3314 Uncharacterized protein conserved in bacteria       53   1e-06

>BH2588 [S] COG3314 Uncharacterized protein conserved in bacteria
          Length = 411

 Score =  268 bits (686), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 147/334 (44%), Positives = 214/334 (64%), Gaps = 12/334 (3%)

Query: 26  PASSLDAALRGLSVWWDVLFPSLFPFFVISEMMLGFGVVHLFGALLDPLMRPLFNIPGSG 85
           P  +L+A+ RGL++WWDV+FPSL PFF++SE+++GFGVV L G  L+PLMRP+F +PG G
Sbjct: 27  PKEALEASTRGLTMWWDVVFPSLLPFFIVSELLIGFGVVSLLGTFLEPLMRPIFRVPGVG 86

Query: 86  GFVAAMGYVSGYPVGARLTAKLREQGLLNRVEGERLVAFTTSSDPIFLLGAVSVGFFHDA 145
           GFV AMG  SGYP GA+LTA++R++  L ++E ERLV+FT SS+P+F+ GA++VGFF +A
Sbjct: 87  GFVWAMGLASGYPAGAKLTARMRQEKKLTKIEAERLVSFTNSSNPLFIFGAIAVGFFQNA 146

Query: 146 SLGLILALAHYGGGLIVGLLMSFHGRXXXXXXXXXXXXXXXERAGRLRS---ALSSMAEA 202
           +LGL+LAL+HY G + VG+LM FHG                +R  + RS   A+S + E 
Sbjct: 147 ALGLLLALSHYLGNICVGILMRFHG-------SEEERFLRQQRKPQDRSLNHAMSIIYEE 199

Query: 203 RRRDGRSVGELLKGAVQSSLQXXXXXXXXXXXXNVLMEMMDRAGIMSALFSFTGRLLSLA 262
           R++DGR +G+LL  AVQSS++            +VL  ++   G    L      +LS  
Sbjct: 200 RKKDGRPLGKLLGDAVQSSVRTLLMVGGFIILFSVLNRILTLIGFTDFLAVLFSIILSFF 259

Query: 263 GFPAELSTALVSGLFEVTLGTRSAGAAAASVPLEFKAAAGAWVLSWGGLSVHAQVASILN 322
             P ELS  L+SGLFE+TLG + A     +   + +    ++ L++ G SV AQVASIL 
Sbjct: 260 QLPNELSIPLISGLFEITLGAQLASQVTEATLFQ-QVVVTSFFLAFCGFSVQAQVASILA 318

Query: 323 GTGLRYLPFLAARLVHAFLSTGLVLLLWKPFAHS 356
            T +R+ PF  AR+ H F +  + ++LW P+ ++
Sbjct: 319 ETDIRFKPFFVARIFHGFFAAIISVILW-PYVYT 351


>SA0308 [S] COG3314 Uncharacterized protein conserved in bacteria
          Length = 437

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 56  EMMLGFGVVHLFGALLDPLMRPLFNIPGSGGFVAAMGYVSGYPVGARLTAKLREQGLLNR 115
            +++G+G++   G  ++P+MRP+F  PG     A   +V  Y +G  +T ++ +QG+ N+
Sbjct: 138 SLLVGYGLLEFVGVYMEPIMRPIFKTPGKSAVDAVASFVGSYSLGLLITNRVYKQGMYNK 197

Query: 116 VEGERLVA-FTTSSDPIFLLGAVSVG 140
            E   +   F+T S    ++ A ++G
Sbjct: 198 REATIIATGFSTVSATFMIIVAKTLG 223


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.325    0.140    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 23,777,267
Number of extensions: 835310
Number of successful extensions: 5824
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5823
Number of HSP's successfully gapped: 5
Length of query: 413
Length of database: 38,378,431
Length adjustment: 109
Effective length of query: 304
Effective length of database: 25,807,025
Effective search space: 7845335600
Effective search space used: 7845335600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 117 (49.7 bits)