BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0420.0015.p
         (134 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc4317 [R] COG2346 Truncated hemoglobins                              78   4e-15
SMc01520 [R] COG2346 Truncated hemoglobins                             73   1e-13
Rv2470 [R] COG2346 Truncated hemoglobins                               70   1e-12
MT2546 [R] COG2346 Truncated hemoglobins                               70   1e-12

>AGc4317 [R] COG2346 Truncated hemoglobins
          Length = 195

 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 2/98 (2%), Positives = 7/98 (7%), Gaps = 3/98 (3%)

Query: 6   SIYDNLGGAEGVHRLVESFYAKVQLHP---RLGPLFPADITPVMEKQYQFLSQFFGGPAL 62
                      +    E     +               D            +        
Sbjct: 25  IPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVT 84

Query: 63  YSELHGHPMMRARHMHIPITPERAEEWLECMNEALEET 100
                             +           +       
Sbjct: 85  PDATLAVADREMPGFGEQMRQISLHFVPTAILSRQVGV 122


>SMc01520 [R] COG2346 Truncated hemoglobins
          Length = 130

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 3/100 (3%)

Query: 4   NDSIYDNLGGAEGVHRLVESFYAKVQLHP---RLGPLFPADITPVMEKQYQFLSQFFGGP 60
             ++Y+ +GG   V  L + FY  +   P   R   + P D+T   EK Y++L+ + GGP
Sbjct: 6   TTTLYEAIGGDATVRALTQRFYELMDSLPEAARCRAVHPPDLTGSEEKFYEYLTGWLGGP 65

Query: 61  ALYSELHGHPMMRARHMHIPITPERAEEWLECMNEALEET 100
            +Y +  GHPM+R RH    I P   +EWL C   ALEET
Sbjct: 66  PIYVQKRGHPMLRRRHFIAGIGPAERDEWLFCFTRALEET 105


>Rv2470 [R] COG2346 Truncated hemoglobins
          Length = 128

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 6  SIYDNLGGAEGVHRLVESFYAKVQLHPRLGPLFPAD-ITPVMEKQYQFLSQFFGGPALYS 64
          S YD +GGA+    +V  FYA+V     L  ++P D +    E+   FL Q++GGP  YS
Sbjct: 4  SFYDAVGGAKTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYS 63

Query: 65 ELHGHPMMRARHMHIPITPERAEEWLECMNEAL 97
          E  GHP +R RH    I+    + WL CM+ A+
Sbjct: 64 EQRGHPRLRMRHAPFRISLIERDAWLRCMHTAV 96


>MT2546 [R] COG2346 Truncated hemoglobins
          Length = 134

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 6   SIYDNLGGAEGVHRLVESFYAKVQLHPRLGPLFPAD-ITPVMEKQYQFLSQFFGGPALYS 64
           S YD +GGA+    +V  FYA+V     L  ++P D +    E+   FL Q++GGP  YS
Sbjct: 10  SFYDAVGGAKTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYS 69

Query: 65  ELHGHPMMRARHMHIPITPERAEEWLECMNEAL 97
           E  GHP +R RH    I+    + WL CM+ A+
Sbjct: 70  EQRGHPRLRMRHAPFRISLIERDAWLRCMHTAV 102


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.138    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,798,069
Number of extensions: 325546
Number of successful extensions: 459
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 4
Length of query: 134
Length of database: 38,378,431
Length adjustment: 95
Effective length of query: 39
Effective length of database: 27,421,701
Effective search space: 1069446339
Effective search space used: 1069446339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)