BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0003.p (250 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yjdK [O] COG0109 Polyprenyltransferase (cytochrome oxidase as... 154 2e-37 BS_ctaB [O] COG0109 Polyprenyltransferase (cytochrome oxidase as... 144 1e-34 PA1321 [O] COG0109 Polyprenyltransferase (cytochrome oxidase ass... 132 4e-31 aq_1546_2 [R] COG0517 FOG: CBS domain 132 5e-31 aq_1549 [O] COG1765 Predicted redox protein, regulator of disulf... 132 5e-31 >BS_yjdK [O] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) Length = 98 Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 0/192 (0%), Positives = 0/192 (0%), Gaps = 10/192 (5%) Query: 29 DFITVTKPGIIRSNLIAAFAGYWVA--SGWDVQYG-----RLILTLLGTMLVMASACVFN 81 +F ++ + + + +++ + + + +M F Sbjct: 35 NFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDIDFDLNIMTVDDYFR 94 Query: 82 NYFDRDLDMKMERTRERGLPTGRLKPQTVLIYAIGLGIAGLAVLFAFCGVLAGIFGIVGM 141 Sbjct: 95 - 153 Query: 142 FVYVVVYTLWLKRTSTWSTSVGAISGAMPPVIGYVAVTGAVDLGAWLLFAMLXXXXPAAF 201 Sbjct: 154 213 Query: 202 --LGARHPPQGR 211 Sbjct: 214 225 >BS_ctaB [O] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) Length = 305 Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/187 (41%), Positives = 116/187 (62%), Gaps = 6/187 (3%) Query: 22 KEGAGWRDFITVTKPGIIRSNLIAAFAGYWVA---SGWDV--QYGRLILTLLGTMLVMAS 76 +E W+DF+++ K GI+ SNLI F G W+A SG ++LTL+G+ L++A Sbjct: 17 EETTAWKDFLSLIKIGIVNSNLITTFTGMWLALHISGLSFLGNINTVLLTLIGSSLIIAG 76 Query: 77 ACVFNNYFDRDLDMKMERTRERGLPTGRLKPQTVLIYAIGLGIAGLAVLFAFCGVLAGIF 136 +C NN++DRD+D MERT+ R TG+++P L I L GL +L V+A + Sbjct: 77 SCAINNWYDRDIDHLMERTKVRPTVTGKIQPSQALWSGILLVALGLIMLL-MTTVMAAVI 135 Query: 137 GIVGMFVYVVVYTLWLKRTSTWSTSVGAISGAMPPVIGYVAVTGAVDLGAWLLFAMLXXX 196 G +G+F YVV+YT+W KR T +T VG++SGA+PP+IG+ AV G + + AW+LF +L Sbjct: 136 GFIGVFTYVVLYTMWTKRRYTINTVVGSVSGAVPPLIGWTAVEGNIGVVAWVLFMILFIW 195 Query: 197 XPAAFLG 203 FL Sbjct: 196 QIPHFLA 202 >PA1321 [O] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) Length = 296 Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 75/166 (45%), Positives = 103/166 (62%) Query: 28 RDFITVTKPGIIRSNLIAAFAGYWVASGWDVQYGRLILTLLGTMLVMASACVFNNYFDRD 87 + ++ V KPGII NLIA GY++A+ V+ L+ T++G LV+AS CV NN DRD Sbjct: 4 KRYLLVAKPGIIFGNLIAVAGGYFLAARGSVEPMLLLATVIGLSLVVASGCVLNNCIDRD 63 Query: 88 LDMKMERTRERGLPTGRLKPQTVLIYAIGLGIAGLAVLFAFCGVLAGIFGIVGMFVYVVV 147 +D MERTR R TG++ + L + + LG+AG +L+ L G FVYV + Sbjct: 64 IDRHMERTRGRVTVTGQISLKAALAHGLVLGVAGFGLLWWRTNPLTTALAGFGYFVYVGL 123 Query: 148 YTLWLKRTSTWSTSVGAISGAMPPVIGYVAVTGAVDLGAWLLFAML 193 Y+LW KR S + T VG++SGAMPPV+GY AV+G D GA L A+ Sbjct: 124 YSLWFKRRSQYGTLVGSLSGAMPPVVGYCAVSGQFDAGAASLLAIF 169 >aq_1546_2 [R] COG0517 FOG: CBS domain Length = 117 Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 0/174 (0%), Positives = 0/174 (0%) Query: 28 RDFITVTKPGIIRSNLIAAFAGYWVASGWDVQYGRLILTLLGTMLVMASACVFNNYFDRD 87 + + R + G+ + V Sbjct: 13 MKEAIIEMTAKGFGATAVVNEEGKLVGIITDGDLRRFVNRGGSFENTRAKDVMTKNPKTI 72 Query: 88 LDMKMERTRERGLPTGRLKPQTVLIYAIGLGIAGLAVLFAFCGVLAGIFGIVGMFVYVVV 147 Sbjct: 73 132 Query: 148 YTLWLKRTSTWSTSVGAISGAMPPVIGYVAVTGAVDLGAWLLFAMLXXXXPAAF 201 Sbjct: 133 186 >aq_1549 [O] COG1765 Predicted redox protein, regulator of disulfide bond formation Length = 292 Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 102/174 (58%) Query: 28 RDFITVTKPGIIRSNLIAAFAGYWVASGWDVQYGRLILTLLGTMLVMASACVFNNYFDRD 87 ++++ +TKPGI+ LI G ++ S ++Q + TLLGT L A + V N D+D Sbjct: 13 KEYLVLTKPGIVSLVLITTLGGMYLGSRGELQPELVFWTLLGTGLAAAGSAVLNMVIDKD 72 Query: 88 LDMKMERTRERGLPTGRLKPQTVLIYAIGLGIAGLAVLFAFCGVLAGIFGIVGMFVYVVV 147 +D M RT ER LP G + P I+ I L + L ++ F GVL + + F YV++ Sbjct: 73 IDKLMVRTSERPLPKGTVDPTKAFIFGITLQVFSLVIMLTFVGVLPALLVALASFSYVIL 132 Query: 148 YTLWLKRTSTWSTSVGAISGAMPPVIGYVAVTGAVDLGAWLLFAMLXXXXPAAF 201 Y+L LKR S +T +G ISGA+PPVIGYVA +G+VD+ A LF ++ P F Sbjct: 133 YSLLLKRKSPVATEIGGISGALPPVIGYVAASGSVDINAIALFLLMFMWQPPHF 186 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.141 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,572,813 Number of extensions: 675339 Number of successful extensions: 2470 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 2462 Number of HSP's successfully gapped: 16 Length of query: 250 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 146 Effective length of database: 26,383,695 Effective search space: 3852019470 Effective search space used: 3852019470 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 114 (48.5 bits)