BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0001.p (206 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value DR0597 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invol... 69 6e-12 RC0895 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invol... 67 2e-11 BH2904 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invol... 67 2e-11 aq_988 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invol... 65 9e-11 CC0249 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invol... 64 1e-10 >DR0597 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems Length = 222 Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 2/103 (1%) Query: 31 KGNDKLPVIGEVQDFSLENVDGRPITLADTEGKPRLVYFFFTECPDVCPITTFMLSQTQD 90 +G L V L + GRP TLA ++G+ RLV+F + CPDVCP+T L ++ Sbjct: 32 RGGTALDTPLAVPPLPLTDDRGRPTTLAASDGRLRLVFFGYARCPDVCPVTLAGLERSYK 91 Query: 91 LLKKDGSFGKDVEFVSISFDPLNDTREAIKAFADRFHADYSGW 133 L + V+ V++ DP+NDT + ++ + DRF +SG Sbjct: 92 TLSDEQRRRVQVQLVTV--DPVNDTPKVLRDYLDRFDPAFSGL 132 >RC0895 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems Length = 205 Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 14/146 (9%) Query: 44 DFSLENVDGRPITLADTEGKPRLVYFFFTECPDVCPITTFMLSQTQDLLKKDGSFGKDVE 103 DF L + +G +G L+YF FT CPD+CP + +++ ++L K D+ Sbjct: 52 DFELIDQNGEIFNSDKLKGNLSLIYFGFTSCPDICPTSLNKMTEIVEILNKHKI---DIL 108 Query: 104 FVSISFDPLNDTREAIKAFADRFHADYSGWYFLRGDQEQVRTLAADSFKVL---IYGDNK 160 V I+ DP DT A+K + FH + G L G+++Q++ + D FKV ++GD+ Sbjct: 109 PVFITIDPKRDTPIALKEYLKHFHPKFIG---LTGNEQQIKDV-TDKFKVFYARVHGDDD 164 Query: 161 D-NFA--HANLIGLVDRNNR-LRGLY 182 D N+ H++ L+D N + L+ Y Sbjct: 165 DPNYMLDHSSFTYLIDANGKYLKHFY 190 >BH2904 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems Length = 201 Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 5/149 (3%) Query: 42 VQDFSLENVDGRPITLADTEGKPRLVYFFFTECPDVCPITTFMLSQTQDLLKKDGSFGKD 101 V DF N +G P +G LV FT CP VC I T + QD + ++ G D Sbjct: 43 VPDFEYVNQEGDPFGTEQLKGNYWLVNMIFTHCPGVCNIMTPNMVNLQDAMIEE---GLD 99 Query: 102 VEFVSISFDPLNDTREAIKAFADRFHADYSGWYFLRGDQE-QVRTLAADSFKVLIYGD-N 159 V+ VS + DP DT E +K + + AD+ W F+ G + ++ LA +F ++ D Sbjct: 100 VKVVSFTVDPDRDTPELLKVYGENVGADFEYWSFVTGYSDGEITELAKTAFASIVQEDPE 159 Query: 160 KDNFAHANLIGLVDRNNRLRGLYDAGDTE 188 ++ H LVD + YD T+ Sbjct: 160 NEDIIHTTDFFLVDDQGLVIRRYDGMATD 188 >aq_988 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems Length = 197 Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 16/162 (9%) Query: 48 ENVDGRPITLADT--EGKPRLVYFFFTECPDVCPITTFMLSQTQDLLKKDGSFGKDVEFV 105 EN + + L D E LV+F FT CPDVCP +L T L +D K V+ V Sbjct: 43 ENGKVKEVCLKDILKEKDIVLVFFGFTHCPDVCPAAMEVLKNTMKKLDEDER--KRVQVV 100 Query: 106 SISFDPLNDTREAIKAFADRFHADYSGWYFLRGDQEQVRTLAADSFKVLI-----YGDNK 160 IS DP DT + + +A F + G L G E+++ +A ++KV G N Sbjct: 101 FISVDPERDTPKLVSQYAKYFDESFLG---LTGTPEEIKEVAK-AYKVFYEKVPQKGSND 156 Query: 161 DNFAHANLIGLVDRNNRLRGLYDAGDTENVTPEFLAGALKKL 202 H+ LI L+ ++ +++ +Y A + P +A +KKL Sbjct: 157 YLVNHSALIYLITKDGKIKLIYSASKQK---PNLIAEDVKKL 195 >CC0249 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems Length = 196 Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 83/183 (45%), Gaps = 17/183 (9%) Query: 29 WNKGNDKL-PVIGEVQDFSLENVDGRPITLADTEGKPRLVYFFFTECPDVCPITTFMLSQ 87 WN G + P + F L + +G P + +GK V+F FT CPDVCP T L+ Sbjct: 24 WNVGVFRSEPAVTVGGPFELVDQNGAPTSEKALKGKWSAVFFGFTYCPDVCPGTLQGLAA 83 Query: 88 TQDLLKKDGSFGKDVEFVSISFDPLNDTREAIKAFADRFHADY--SGWYFLRGDQEQVRT 145 D L G KD + V IS DP DT + +KA+ A Y L G Q QV Sbjct: 84 ATDQL---GPKAKDFQIVFISIDPARDTVKQMKAY---LSAPYVPKATIGLTGTQAQVDA 137 Query: 146 LAADSFKV--LIYGDNKD-NFAHANLIGLVDRNNRLRGLYDAGDTENVTPEFLAGALKKL 202 AA +++V GD D H+ I L+D R + + N+ P+ +A +K Sbjct: 138 -AAKAYRVYHAKVGDGVDYTMDHSTAIYLMDPKGRFKTVIP----YNLPPDEIARRIKDA 192 Query: 203 ARE 205 RE Sbjct: 193 VRE 195 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.139 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,348,047 Number of extensions: 577916 Number of successful extensions: 1061 Number of sequences better than 1.0e-05: 17 Number of HSP's gapped: 1048 Number of HSP's successfully gapped: 17 Length of query: 206 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 105 Effective length of database: 26,729,697 Effective search space: 2806618185 Effective search space used: 2806618185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 113 (48.1 bits)