BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0417.0018.p
         (81 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yraD [M] COG5577 Spore coat protein                                108   2e-24
CAC0613 [M] COG5577 Spore coat protein                                 99   1e-21
BS_yraF [M] COG5577 Spore coat protein                                 74   8e-14
BH0743 [M] COG5577 Spore coat protein                                  71   4e-13
BS_cotF [M] COG5577 Spore coat protein                                 67   9e-12

>BS_yraD [M] COG5577 Spore coat protein
          Length = 99

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 69/81 (85%)

Query: 1  VIAMDFLMNAKSGVRNYAMAVTECATPEIKQILMKQLDEAIDSHEKITIYIMQRGLYHPY 60
          +IAMD L++AK+GVRNYAMA TE  TPE+K++L++ L+EA+D HE+++ Y+M++G YHP+
Sbjct: 18 IIAMDLLISAKNGVRNYAMAATEAGTPEVKEVLIRHLEEALDMHEQLSSYMMEKGWYHPW 77

Query: 61 HIPEQIQLDLKNIQTAMNIPS 81
          +  EQ++L+LKNI TA+ +P+
Sbjct: 78 NPDEQVKLNLKNIDTAIQLPT 98


>CAC0613 [M] COG5577 Spore coat protein
          Length = 98

 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 61/79 (77%)

Query: 1  VIAMDFLMNAKSGVRNYAMAVTECATPEIKQILMKQLDEAIDSHEKITIYIMQRGLYHPY 60
          V+A DFL++ KSGV+NYA+A+TE ATP ++ IL K LDE I+ HEKI  Y+M  G YHPY
Sbjct: 18 VVATDFLISTKSGVKNYAVAITETATPRVRAILRKHLDEGINCHEKILNYMMTNGYYHPY 77

Query: 61 HIPEQIQLDLKNIQTAMNI 79
          ++ EQ + D+K+ +T++N+
Sbjct: 78 NMQEQYKTDMKSTETSLNL 96


>BS_yraF [M] COG5577 Spore coat protein
          Length = 122

 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query: 1  VIAMDFLMNAKSGVRNYAMAVTECATPEIKQILMKQLDEAIDSHEKITIYIMQRGLYHPY 60
            AMDFL+ AK GVRN A+A+TE A+P+++ +L KQL + I  H++IT  ++ +  +HPY
Sbjct: 21 TFAMDFLIRAKEGVRNTAVALTETASPDVRALLRKQLMQGIAMHQEITELMISKKWFHPY 80

Query: 61 HIPEQIQLD 69
           + EQ +LD
Sbjct: 81 ELSEQYKLD 89


>BH0743 [M] COG5577 Spore coat protein
          Length = 105

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 57/78 (73%)

Query: 1  VIAMDFLMNAKSGVRNYAMAVTECATPEIKQILMKQLDEAIDSHEKITIYIMQRGLYHPY 60
          V+A D L+ AK+G++N A A++E ATPE++  L +QLD+ I  H ++T Y+M+ G YHPY
Sbjct: 18 VVATDMLIAAKAGIKNIATAISESATPEVRAALQQQLDQQIRFHGQMTEYMMKNGYYHPY 77

Query: 61 HIPEQIQLDLKNIQTAMN 78
          ++ EQ+++DL    TA++
Sbjct: 78 NMEEQVRVDLAAANTALS 95


>BS_cotF [M] COG5577 Spore coat protein
          Length = 160

 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 52/75 (69%)

Query: 5   DFLMNAKSGVRNYAMAVTECATPEIKQILMKQLDEAIDSHEKITIYIMQRGLYHPYHIPE 64
           D L  AK+ VR+YA+A+TE ATP+++ +L+KQL+ AI  H ++  Y+ Q G Y  Y++ E
Sbjct: 85  DLLGFAKTSVRSYAIAITETATPQLRNVLVKQLNAAIQLHAQVYRYMYQHGYYPSYNLSE 144

Query: 65  QIQLDLKNIQTAMNI 79
            ++ D++N   A+++
Sbjct: 145 LLKNDVRNANRAISM 159


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,134,567
Number of extensions: 149002
Number of successful extensions: 255
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 5
Length of query: 81
Length of database: 38,378,431
Length adjustment: 52
Effective length of query: 29
Effective length of database: 32,381,063
Effective search space: 939050827
Effective search space used: 939050827
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)