BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0417.0009.p
         (607 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic ...    77   7e-14
SPy1592 [G] COG1653 ABC-type sugar transport system, periplasmic...    56   2e-07

>SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic component
          Length = 538

 Score = 77.4 bits (189), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 13/270 (4%)

Query: 95  TYKYFSFGGPKKQVLGSETTIGKELQKQTGVDWNIEYLVGDGDTKAGVMIASGDYPDIID 154
           T K+ +   P      +E  I + L+K+TGV  +      D   K  + I+SGD PD I 
Sbjct: 48  TLKFMTASSPLSPKDPNEKLILQRLEKETGVHIDWTNYQSDFAEKRNLDISSGDLPDAIH 107

Query: 155 SSG----QMAKLMDAGAFIPLDDLIEKYGPNIKRVYG--PYYEKFRQK-DGKLYFFPYGA 207
           + G     +      G  IP++DLI+KY PN+K++    P Y+      DG +Y FP+  
Sbjct: 108 NDGASDVDLMNWAKKGVIIPVEDLIDKYMPNLKKILDEKPEYKALMTAPDGHIYSFPWIE 167

Query: 208 NIGYLSEP--NFQTGFYIQRSVLKEFNYPKITTLDEYFDLIKQYKEKHPQVDGK-DTIGF 264
            +G   E   +     +I +  LK+       T D+   +++ +K   P  +G+ D I F
Sbjct: 168 ELGDGKESIHSVNDMAWINKDWLKKLGLEMPKTTDDLIKVLEAFKNGDPNGNGEADEIPF 227

Query: 265 ATFAGEQGSFFTLQNPAMHLAGSPNDGGTMVDMKTHEAKLVAGSEYQKRWIQKLNEANAQ 324
           +  +G     F     A    G  ++   +V     +    A ++  K  ++ + +   +
Sbjct: 228 SFISGNGNEDFKFLFAAF---GIGDNDDHLVVGNDGKVDFTADNDNYKEGVKFIRQLQEK 284

Query: 325 GLVDPESFTMNRDQYLAKLTSGRVLGYFSY 354
           GL+D E+F  + + Y+AK    +   YF++
Sbjct: 285 GLIDKEAFEHDWNSYIAKGHDQKFGVYFTW 314


>SPy1592 [G] COG1653 ABC-type sugar transport system, periplasmic component
          Length = 380

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 17/192 (8%)

Query: 68  SNTSDGASNSPAAKGNSASGSGDTSPVTYKYFSFGGPKKQVLGSETTIG-KELQKQTGVD 126
           + T    SN  A +  SAS   D   + Y+     G K        TI  K ++++TG  
Sbjct: 11  TGTVLATSNLAACESKSASKDSDVKLLMYQV----GDKPDNFDELMTIANKRIKEKTGAT 66

Query: 127 WNIEYL-VGDGDTKAGVMIASGDYPDIIDSSGQMAKLMDAGAFIPLDDLIEKYGPNIKRV 185
            +++Y+  GD D K   +IASG+  DI  ++  +      GAF  L  L+ KY     + 
Sbjct: 67  VDLQYIGWGDWDDKMSTIIASGENYDIAFANNYVVN-AQKGAFADLTTLMPKYAKKTYKN 125

Query: 186 YGPYYEKFRQKDGKLYFFPYGANIGYLSEPNFQTGFYIQRSVLKEFNYPKITTLDEYFD- 244
             P Y K    DGKLY FP  AN+        Q      + ++ ++    I+ +  Y D 
Sbjct: 126 LDPAYIKGNTIDGKLYAFPVDANV------YAQQMLSFNKELVDKYGL-DISNIKSYADA 178

Query: 245 --LIKQYKEKHP 254
             ++KQ+ EK P
Sbjct: 179 ENVLKQFHEKEP 190


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 48,798,700
Number of extensions: 2237340
Number of successful extensions: 3315
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3314
Number of HSP's successfully gapped: 3
Length of query: 607
Length of database: 38,378,431
Length adjustment: 112
Effective length of query: 495
Effective length of database: 25,461,023
Effective search space: 12603206385
Effective search space used: 12603206385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 119 (50.4 bits)