BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0417.0008.p (305 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 360 1e-99 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 285 7e-77 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 191 2e-48 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 189 4e-48 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 189 6e-48 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 360 bits (925), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 176/302 (58%), Positives = 214/302 (70%), Gaps = 1/302 (0%) Query: 5 HLFFKRLIQQKTLAFMCIPFVIWAFVFKYLPLWGWTMAFQNYKPARSYSEQEWAGLKHFR 64 LFFK+ +QK L M +PF+IW +F+Y+PL+GW++AFQ+++PAR +Q+WAG KHF Sbjct: 36 KLFFKKCYEQKALLLMSLPFLIWLIIFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFT 95 Query: 65 ILFEDSTFYRVLRNTLVMSTIQLVLGFVXXXXXXXXXXXXXXXXXXRVVQTVSYLPHFIS 124 LF D F+ VLRNTL MS I LVLGFV RVVQT+SY+PHF+S Sbjct: 96 FLFTDPRFFEVLRNTLAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLS 155 Query: 125 WVVASSIVLTVLS-PDGIINXXXXXXXXXXXXXXWMGKGNYFWGILGVTQVWKDVGWNTI 183 WVVA+ +V LS +GIIN W+G G YFWGI+G + VWK+VGWNTI Sbjct: 156 WVVAAGLVSAALSIENGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTI 215 Query: 184 IYLAAITSIDPSQYEAAEIDGASRFQRMLNITLPGLKPVXXXXXXXXXXXXXESGFEPQY 243 IYLAAIT ID QYEAAEIDGA+R QR+ ITLPG++PV ESGFE QY Sbjct: 216 IYLAAITMIDTEQYEAAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQY 275 Query: 244 LLGNGMNLEYSENLDIFVLKYGLGMGNFSLGTAAGIFKTVVSFIFLFSANHIAKRMGESR 303 LL N MN++++ENLDIFVL+YG+ MGNFSL TAAGIFKTVVSFIFLFSANHIAKR+GE+R Sbjct: 276 LLMNPMNMDFAENLDIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGEAR 335 Query: 304 LF 305 LF Sbjct: 336 LF 337 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 285 bits (728), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 143/289 (49%), Positives = 186/289 (64%), Gaps = 1/289 (0%) Query: 11 LIQQKTLAFMCIPFVIWAFVFKYLPLWGWTMAFQNYKPARSYSEQEWAGLKHFRILFEDS 70 L QQK L M +PFV W VF Y PLWGWTMAFQN++P S+ EQEW GL+HF LF+D+ Sbjct: 24 LKQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQDN 83 Query: 71 TFYRVLRNTLVMSTIQLVLGFVXXXXXXXXXXXXXXXXXXRVVQTVSYLPHFISWVVASS 130 FY VLRNTL MS + L++GF R VQTVSYLPHF+SWVV + Sbjct: 84 RFYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAG 143 Query: 131 IVLTVLSPD-GIINXXXXXXXXXXXXXXWMGKGNYFWGILGVTQVWKDVGWNTIIYLAAI 189 IV +LS D GI+N +M KG +FW I+ ++ +WK++GWN+II+LAA+ Sbjct: 144 IVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAAM 203 Query: 190 TSIDPSQYEAAEIDGASRFQRMLNITLPGLKPVXXXXXXXXXXXXXESGFEPQYLLGNGM 249 IDP YEAA++DGASR++++ +ITLPG++P GFE Q+LLGN + Sbjct: 204 AGIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLGNPL 263 Query: 250 NLEYSENLDIFVLKYGLGMGNFSLGTAAGIFKTVVSFIFLFSANHIAKR 298 ++YSE LD++ L YGLG+G +S GTA GIF +VV I LF AN I KR Sbjct: 264 VVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKR 312 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 95/277 (34%), Positives = 151/277 (54%), Gaps = 3/277 (1%) Query: 30 VFKYLPLWGWTMAFQNYKPARSYSEQEWAGLKHFRILFEDSTFYRVLRNTLVMSTIQLVL 89 +FKYLP+WG +AF++Y P + + EW G +F+ F + F+R+LRNTL+++++ L+ Sbjct: 44 IFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLDLLF 103 Query: 90 GFVXXXXXXXXXXXXXXXXXXRVVQTVSYLPHFISWVVASSIVLTVLSPD-GIINXXXXX 148 F R +QT Y+PHF+SW + SI + D G+IN Sbjct: 104 AFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVIN--KLI 161 Query: 149 XXXXXXXXXWMGKGNYFWGILGVTQVWKDVGWNTIIYLAAITSIDPSQYEAAEIDGASRF 208 ++ ++F ++ + +WK+ GW TI++LAA+ ++D QYEAA +DGA RF Sbjct: 162 MSLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGRF 221 Query: 209 QRMLNITLPGLKPVXXXXXXXXXXXXXESGFEPQYLLGNGMNLEYSENLDIFVLKYGLGM 268 +RM +ITLP ++ GFE YL+ N +N ++ D +V G+ Sbjct: 222 RRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGITQ 281 Query: 269 GNFSLGTAAGIFKTVVSFIFLFSANHIAKRMGESRLF 305 G +S TA G+FK+VV I +F AN+IAK+ + LF Sbjct: 282 GAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQEGLF 318 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 189 bits (480), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 110/298 (36%), Positives = 167/298 (56%), Gaps = 3/298 (1%) Query: 9 KRLIQQKTLAFMCIPFVIWAFVFKYLPLWGWTMAFQNYKPARSYSEQEWAGLKHFRILFE 68 KR+ + K L M +P +++ +FKY+P+WG +AFQ+Y+P + EW G KHF LF Sbjct: 30 KRIFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSEWVGFKHFERLFT 89 Query: 69 DSTFYRVLRNTLVMSTIQLVLGFVXXXXXXXXXXXXXXXXXXRVVQTVSYLPHFISWVVA 128 + TF+++LRNTLV+ L+ F R VQT+ Y+PHF+SWV+ Sbjct: 90 EPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYIPHFMSWVIV 149 Query: 129 SSIVLTVLSPDG-IINXXXXXXXXXXXXXXWMGKGNYFWGILGVTQVWKDVGWNTIIYLA 187 S+ + + DG +IN ++ ++F + + +W++ GW TIIY A Sbjct: 150 VSLTYVLFTTDGGVINEIIYSITGKNVN--FLMSEDWFRPLYILQVIWREAGWATIIYFA 207 Query: 188 AITSIDPSQYEAAEIDGASRFQRMLNITLPGLKPVXXXXXXXXXXXXXESGFEPQYLLGN 247 AI +IDPS YEAA++DGA+RF+++ +ITLP ++ V E GFE +L+ N Sbjct: 208 AIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILELGFEHVFLMLN 267 Query: 248 GMNLEYSENLDIFVLKYGLGMGNFSLGTAAGIFKTVVSFIFLFSANHIAKRMGESRLF 305 MN E +E D +V GL G FS TA G FK++V I + AN +AK+ GE ++ Sbjct: 268 AMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKKFGEEGVY 325 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 101/299 (33%), Positives = 172/299 (57%), Gaps = 6/299 (2%) Query: 8 FKRLIQQKTLAFMCIPFVIWAFVFKYLPLWGWTMAFQNYKPARSYSEQEWAGLKHFRILF 67 F+R Q L + IP ++ A +F+Y P++G MAFQ+YKP ++ EW GL+HF +F Sbjct: 24 FRRTWQ---LHVLLIPALVLALIFQYGPMFGIVMAFQDYKPWLGFTGSEWVGLQHFITMF 80 Query: 68 EDSTFYRVLRNTLVMSTIQLVLGFVXXXXXXXXXXXXXXXXXXRVVQTVSYLPHFISWVV 127 E +V+ NTLV+S ++++ G + R VQT+ YLP+F+SWV+ Sbjct: 81 EYDYAKQVIWNTLVISVLKMIFGLIVPIIVALLLNEMYQMVVKRTVQTIIYLPYFLSWVI 140 Query: 128 ASSIVLTVLSPDG-IINXXXXXXXXXXXXXXWMGKGNYFWGILGVTQVWKDVGWNTIIYL 186 I++ VLSPDG I+N ++G ++F + ++ +WK+ G+NTI++L Sbjct: 141 LGGILIDVLSPDGGIVNQALGLFGIDPIF--FLGSNDWFRTTVVISDLWKETGFNTIVFL 198 Query: 187 AAITSIDPSQYEAAEIDGASRFQRMLNITLPGLKPVXXXXXXXXXXXXXESGFEPQYLLG 246 AAIT+++P+ YEAA +DGA+R+++ L+ITLP + P+ +GF+ + L Sbjct: 199 AAITAVNPNLYEAAVVDGANRWKQTLHITLPAMLPIIIVVATLSLGNILNAGFDQIFNLY 258 Query: 247 NGMNLEYSENLDIFVLKYGLGMGNFSLGTAAGIFKTVVSFIFLFSANHIAKRMGESRLF 305 N + + + +D +V + L G+FS GTA G+FK+++S + + +A + R+F Sbjct: 259 NPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVGLFKSLISLVLIIIGYRLAYKYANWRIF 317 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.141 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,553,136 Number of extensions: 635044 Number of successful extensions: 1715 Number of sequences better than 1.0e-05: 73 Number of HSP's gapped: 1672 Number of HSP's successfully gapped: 73 Length of query: 305 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 199 Effective length of database: 26,153,027 Effective search space: 5204452373 Effective search space used: 5204452373 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)