BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0417.0007.p (305 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 215 9e-56 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 212 8e-55 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 209 3e-54 SP0091 [G] COG0395 ABC-type sugar transport system, permease com... 202 4e-52 BH0795 [G] COG0395 ABC-type sugar transport system, permease com... 202 5e-52 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 215 bits (547), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 108/302 (35%), Positives = 190/302 (62%), Gaps = 15/302 (4%) Query: 9 LRNSSLGDRIFDICNIIFMVCLMIVTMYPFINMIAVSLNDANDAVRGGIYLWPRMWTLNN 68 + + SLG R+F+I N +F+ ++ PF++++A S + ++ L+P ++L+ Sbjct: 2 VHDQSLGSRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDA 61 Query: 69 YKYIFGESDIYHATLISLLRTVMGTAVSVFCTAMLAFTVSRQEFVLRKFVTLFFVFTMYF 128 Y+YIF I+ + +IS+L TV+GT S+F T+++A+ +SR++ R+ + VFTM F Sbjct: 62 YRYIFSTDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLF 121 Query: 129 SGGLIPGYLLIRNLGLTDSFWVYIVPGVIGVFNMIVIRSFIEGLPEGILESARIDGAGEF 188 SGG+IP +L++R+LGL D++W I+P I FN+I++++F + +PE + ESA+IDG + Sbjct: 122 SGGMIPTFLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCNDV 181 Query: 189 TTFIRVVLPLTIPAMATVSLFVAVGQWNSWFDVFLY--NSSNIKLSTLQYELMKI---LQ 243 F R+V PL++PA+AT+SLF AV WN++ LY +SS + L +++ + +Q Sbjct: 182 GIFFRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIVIMSSGMQ 241 Query: 244 TTNTSATAGAVEAYQSAENTVRVTPTSLRATMTIIASVPILMVYPFLQRYFVQGMTVGGV 303 T AG V E T+++ + ++A++P+L+VYPF+Q++F +G +G V Sbjct: 242 GDLTELGAGFV---MPPEQTIKM-------AVIVVATIPVLIVYPFIQKHFAKGALLGSV 291 Query: 304 KG 305 KG Sbjct: 292 KG 293 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 212 bits (539), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 112/298 (37%), Positives = 185/298 (62%), Gaps = 10/298 (3%) Query: 9 LRNSSLGDRIFDICNIIFMVCLMIVTMYPFINMIAVSLNDANDAVRGGIYLWPRMWTLNN 68 + N+ G R+FD+CNI+F+ + +T+ PF+ +IA S + + +++P+ +TL+ Sbjct: 7 MHNTKAG-RVFDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDA 65 Query: 69 YKYIFGESDIYHATLISLLRTVMGTAVSVFCTAMLAFTVSRQEFVLRKFVTLFFVFTMYF 128 YKY+F + +S+ TV+GTAV +F T +A+ ++++ R + +F+M F Sbjct: 66 YKYVFSTPTFLRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLF 125 Query: 129 SGGLIPGYLLIRNLGLTDSFWVYIVPGVIGVFNMIVIRSFIEGLPEGILESARIDGAGEF 188 SGG+IP YL++++LGL D++W I+P I FN+I+I++F + LP + ESA+IDG E Sbjct: 126 SGGMIPTYLVVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSEI 185 Query: 189 TTFIRVVLPLTIPAMATVSLFVAVGQWNSWFDVFLYNSSNIKLSTLQYELMKILQTTNTS 248 F R+ LPL+ P +AT +LF AVG WN +F LY + + K LQ L ++ ++ + Sbjct: 186 GVFWRIALPLSKPVIATFALFYAVGIWNDFFHALLYINDSAKWP-LQMVLRQVTILSDLT 244 Query: 249 ATAGAVEAYQSAENTVRVTPTS-LRATMTIIASVPILMVYPFLQRYFVQGMTVGGVKG 305 AT G + Q+A V P ++ + +IA++PIL VYPFLQ++F +GM +G VKG Sbjct: 245 ATNG--DTMQNA-----VPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVKG 295 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 105/292 (35%), Positives = 184/292 (63%), Gaps = 6/292 (2%) Query: 14 LGDRIFDICNIIFMVCLMIVTMYPFINMIAVSLNDANDAVRGGIYLWPRMWTLNNYKYIF 73 + +R+FD+ F++ ++ + PFI++IA S + V L P ++L+ Y+YIF Sbjct: 1 MKNRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIF 60 Query: 74 GESDIYHATLISLLRTVMGTAVSVFCTAMLAFTVSRQEFVLRKFVTLFFVFTMYFSGGLI 133 IY + L+S+ TV+GTAVS+F ++++A+ +SR++ + R+ + VFTM FSGG+I Sbjct: 61 STDIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMI 120 Query: 134 PGYLLIRNLGLTDSFWVYIVPGVIGVFNMIVIRSFIEGLPEGILESARIDGAGEFTTFIR 193 P +L++++LGL DS+W I+P I FN+I++++F + +P + ESA+IDG + F + Sbjct: 121 PTFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFK 180 Query: 194 VVLPLTIPAMATVSLFVAVGQWNSWFDVFLYNSSNIKLSTLQYELMKILQTTNTSATAGA 253 +VLPL++PA+AT+SLF AV WN++ LY + + K +Q L +I+ +S G Sbjct: 181 IVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWP-IQVLLRQIVIV--SSGMQGD 237 Query: 254 VEAYQSAENTVRVTPTSLRATMTIIASVPILMVYPFLQRYFVQGMTVGGVKG 305 + S T ++ + ++A++P+L+VYPF+Q++F +G +G VKG Sbjct: 238 MSEMGSGSPPPEQT---IKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG 286 >SP0091 [G] COG0395 ABC-type sugar transport system, permease component Length = 307 Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 115/297 (38%), Positives = 180/297 (60%), Gaps = 14/297 (4%) Query: 12 SSLGDRIFDICN-IIFMVCLMIVTMYPFINMIAVSLNDANDAVRGGIYLWPRMWTLNNYK 70 S D F I + +I + C++ PF+ +I +S+ D ++ G +P + L+ ++ Sbjct: 20 SKKADIFFSIISGLIALSCIL-----PFVFVIIISVTDEKSLLQYGYSFFPSQFGLDGFE 74 Query: 71 YIFGESD-IYHATLISLLRTVMGTAVSVFCTAMLAFTVSRQEFVLRKFVTLFFVFTMYFS 129 ++ D I A IS+ TV+GT +VF T A+ +SR F R+F T+F + +M F+ Sbjct: 75 FLAQFKDKILQALFISVFVTVVGTLTNVFITTTYAYAISRTTFKYRRFFTIFVLLSMLFN 134 Query: 130 GGLIPGYLLI-RNLGLTDSFWVYIVPGVIGVFNMIVIRSFIEG-LPEGILESARIDGAGE 187 GL+PGY+++ R L L D+ W IVP ++ FN+I++RSF + +PE ILESARIDGA E Sbjct: 135 AGLVPGYIMVTRVLQLGDTVWALIVPMLLSPFNIILMRSFFKKTIPEAILESARIDGASE 194 Query: 188 FTTFIRVVLPLTIPAMATVSLFVAVGQWNSWFDVFLYNSSNIKLSTLQYELMKILQTTNT 247 F ++ LPL++P +AT++L A+G WN WF+ LY S+ L LQY LM+I Q + Sbjct: 195 ARIFFQICLPLSLPGIATITLLTALGFWNDWFNALLYIKSD-NLYPLQYLLMQIQQNMDY 253 Query: 248 SATAGAVEAYQSAENTVRVTPTSLRATMTIIASVPILMVYPFLQRYFVQGMTVGGVK 304 A A + + V + + R M ++A++PI ++YPF QRYFV+G+T+GGVK Sbjct: 254 IAKAVGL----IGQLGVALPKETGRMAMVVVATLPIAILYPFFQRYFVKGLTIGGVK 306 >BH0795 [G] COG0395 ABC-type sugar transport system, permease component Length = 322 Score = 202 bits (514), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 111/287 (38%), Positives = 176/287 (61%), Gaps = 9/287 (3%) Query: 25 IFMVCLM----IVTMYPFINMIAVSLNDANDAVRGGIYLWPRMWTLNNYKYIFG-ESDIY 79 IFM L+ + ++PFI +I +SL G + P W+ + Y+Y++ S+++ Sbjct: 37 IFMHTLIGTFAFLCIFPFIYVIIISLTSEQSLAMNGYRIIPSEWSFDAYRYLWQMRSEVF 96 Query: 80 HATLISLLRTVMGTAVSVFCTAMLAFTVSRQEFVLRKFVTLFFVFTMYFSGGLIPGYLLI 139 A +++ TV+GT +SV A+ A+ +SR++F+ RK T FTM FSGG++P Y+++ Sbjct: 97 RAYGVTIFITVVGTLMSVSIIALYAYAISRKQFLYRKLFTFIAFFTMLFSGGMVPFYIVM 156 Query: 140 RN-LGLTDSFWVYIVPGVIGVFNMIVIRSFIE-GLPEGILESARIDGAGEFTTFIRVVLP 197 LGL +S W I+P + F +I++R+F + +PE ILESARIDGAGEF F ++VLP Sbjct: 157 TQFLGLKNSVWALILPMAVNAFYIIIMRTFFQRSVPEAILESARIDGAGEFRIFFKIVLP 216 Query: 198 LTIPAMATVSLFVAVGQWNSWFDVFLYNSSNIKLSTLQYELMKILQTTNTSATAGAVEAY 257 L+IP +AT++LF + WN WF+ L+ + KL LQ LM+I + A+ + Sbjct: 217 LSIPGIATIALFSTLAYWNDWFNALLF-IDDPKLVPLQSLLMRI-ENNLDFIRQNAMLSS 274 Query: 258 QSAENTVRVTPTSLRATMTIIASVPILMVYPFLQRYFVQGMTVGGVK 304 Q++ + S R M +IA++PI + YPF Q+YFV+G+T+GGVK Sbjct: 275 QNSALLDSIPQDSARMAMVVIATLPIALSYPFFQKYFVKGLTIGGVK 321 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.140 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,931,997 Number of extensions: 749702 Number of successful extensions: 3676 Number of sequences better than 1.0e-05: 148 Number of HSP's gapped: 3506 Number of HSP's successfully gapped: 148 Length of query: 305 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 199 Effective length of database: 26,153,027 Effective search space: 5204452373 Effective search space used: 5204452373 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)