BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0412.0018.p (264 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0297 [K] COG3711 Transcriptional antiterminator 172 5e-43 BS_licT [K] COG3711 Transcriptional antiterminator 170 3e-42 CAC1406 [K] COG3711 Transcriptional antiterminator 160 2e-39 CAC0422 [K] COG3711 Transcriptional antiterminator 152 4e-37 L0154 [K] COG3711 Transcriptional antiterminator 149 3e-36 >BH0297 [K] COG3711 Transcriptional antiterminator Length = 277 Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 89/239 (37%), Positives = 148/239 (61%), Gaps = 9/239 (3%) Query: 21 EQNKEYILFGKGIGYGQKEGNIVEEHKADQVFVPVENVKVKEYLSVLDTTPPVYAELTGR 80 EQ +E I+ G+GIG+ +K G+ +EE K D+VF + +++ S+L P Y E+T Sbjct: 17 EQKQELIVTGRGIGFQKKRGDELEEEKIDKVFSLKDRAVSEKFKSLLYEVPMEYMEVTEE 76 Query: 81 IVAYAERKLQTKLNTGIYFTLMDHLLFAVERYYKKIAITNKVFWEIKNYYAEEYEIGLFA 140 I++YA+ KL LN IY +L DH+ FA+ER+ I I++ + WE++ Y EE+ IG+ A Sbjct: 77 IISYAKEKLAKDLNDSIYISLTDHINFALERFQNGITISHGLLWELRRLYKEEFAIGMEA 136 Query: 141 LKLIKEKLQIEMPKEEAANIAFHLINAQSGEKESKDGM----KMAKMIGSIVNLVRYSMN 196 L++IK++L IE+P++EA I H+INA+ E GM + K++ ++N+VRY Sbjct: 137 LRIIKDRLGIELPEDEAGFITTHIINAELNE-----GMPNISNITKVVHDLLNIVRYHFK 191 Query: 197 IDMDTENVHYTRFVTHVKFFVERLYTDKMLEVTDNILFEQIASLYPQAMDGAFKIKEYI 255 ++ D +++ + RFVTH+KFF +RL + L D+ L + + + +A D KI E++ Sbjct: 192 MEYDEDSLTFFRFVTHLKFFAQRLLSGTSLNSKDDFLLQIVKENHSEAYDCTLKIGEFL 250 >BS_licT [K] COG3711 Transcriptional antiterminator Length = 277 Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 91/254 (35%), Positives = 159/254 (62%), Gaps = 3/254 (1%) Query: 5 IKIKKVLNSSVVLVEDEQNKEYILFGKGIGYGQKEGNIVEEHKADQVFVPVENVKVKE-Y 63 +KI KV+N++V+ V +EQ KE ++ G+G+ + +K G+ V+E + ++VF ++N V E + Sbjct: 1 MKIAKVINNNVISVVNEQGKELVVMGRGLAFQKKSGDDVDEARIEKVFT-LDNKDVSEKF 59 Query: 64 LSVLDTTPPVYAELTGRIVAYAERKLQTKLNTGIYFTLMDHLLFAVERYYKKIAITNKVF 123 ++L P E++ I+ YA+ +L KLN IY +L DH+ FA++R K + I N + Sbjct: 60 KTLLYDIPIECMEVSEEIIHYAKLQLGKKLNDSIYVSLTDHINFAIQRNQKGLDIKNALL 119 Query: 124 WEIKNYYAEEYEIGLFALKLIKEKLQIEMPKEEAANIAFHLINAQSGEKESKDGMKMAKM 183 WE K Y +E+ IG AL ++K K + +P++EA IA H++NA+ E E + + + K+ Sbjct: 120 WETKRLYKDEFAIGKEALVMVKNKTGVSLPEDEAGFIALHIVNAELNE-EMPNIINITKV 178 Query: 184 IGSIVNLVRYSMNIDMDTENVHYTRFVTHVKFFVERLYTDKMLEVTDNILFEQIASLYPQ 243 + I+++V+Y I+ + E++HY RFVTH+KFF +RL+ +E D+ L + + Y + Sbjct: 179 MQEILSIVKYHFKIEFNEESLHYYRFVTHLKFFAQRLFNGTHMESQDDFLLDTVKEKYHR 238 Query: 244 AMDGAFKIKEYINQ 257 A + KI+ YI + Sbjct: 239 AYECTKKIQTYIER 252 >CAC1406 [K] COG3711 Transcriptional antiterminator Length = 277 Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 148/254 (58%), Gaps = 3/254 (1%) Query: 7 IKKVLNSSVVLVEDEQNKEYILFGKGIGYGQKEGNIVEEHKADQVFVPVENVKVKEYLSV 66 IKK+ N++ ++ E+ E+++ G GI + + G V+E ++ F+ +++ + Sbjct: 3 IKKIFNNNAIIAENSDKHEFVVMGCGIAFKKNIGEKVDERLIEKTFILKGKDASEKFKML 62 Query: 67 LDTTPPVYAELTGRIVAYAERKLQTKLNTGIYFTLMDHLLFAVERYYKKIAITNKVFWEI 126 L+ P Y + I+ YA+ L KLN IY TL DH+ + I I N + WEI Sbjct: 63 LEDVPTEYVSVCYDIIEYAKNVLDAKLNDHIYVTLTDHVSNCFKMIESGIIIHNPLIWEI 122 Query: 127 KNYYAEEYEIGLFALKLIKEKLQIEMPKEEAANIAFHLINAQ--SGEKESKDGMKMAKMI 184 K +Y +E+++GL A+ IK++L ++P++EAANIA HLINAQ + +D K AKMI Sbjct: 123 KKFYPKEFKVGLKAIDFIKDELGKDLPEDEAANIALHLINAQINNSLNNVEDAAKQAKMI 182 Query: 185 GSIVNLVRYSMNIDMDTENVHYTRFVTHVKFFVERLYTDKMLEVT-DNILFEQIASLYPQ 243 I+N+V+Y+ NI +D +++ Y RFVTH++FF R+ + ++ ++ L +Q+ Y Sbjct: 183 QDILNIVKYTYNIVLDEKSISYERFVTHLRFFFHRIDKSETVDTAEEDFLLKQVREKYKD 242 Query: 244 AMDGAFKIKEYINQ 257 A K+++Y+ + Sbjct: 243 AYQCMLKVQKYLGK 256 >CAC0422 [K] COG3711 Transcriptional antiterminator Length = 282 Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 156/254 (61%), Gaps = 5/254 (1%) Query: 7 IKKVLN-SSVVLVEDEQNKEYILFGKGIGYGQKEGNIVEEHKADQVF-VPVENVKVKEYL 64 IKK+LN S+V ++D E ++ GKGI + +K G+I+ E K +++F + +N +K + Sbjct: 3 IKKILNNSAVTTIDDATRIEKVIMGKGIAFQKKPGDILNEEKIEKIFSIENQNENLK-FQ 61 Query: 65 SVLDTTPPVYAELTGRIVAYAERKLQTKLNTGIYFTLMDHLLFAVERYYKKIAITNKVFW 124 S++ P + +++ I++YA+RKL K + IY +L DHL FA RY K I I N + W Sbjct: 62 SLISEIPIEHIKVSENIISYAKRKLDVKFDEHIYISLTDHLSFAFRRYSKGIKIKNNMLW 121 Query: 125 EIKNYYAEEYEIGLFALKLIKEKLQIEMPKEEAANIAFHLINAQSGEKESKDGMKMAKMI 184 +IK Y +EY IG++A++ IK +L I+M ++EA IA H+I+A E + + + ++I Sbjct: 122 DIKRIYKKEYNIGMWAVEYIKGELGIKMDEDEAGFIALHIIDASLNE-SMDNTINITEII 180 Query: 185 GSIVNLVRYSMNIDMDTENVHYTRFVTHVKFFVERLYTDK-MLEVTDNILFEQIASLYPQ 243 I+N+++Y +I+ + +++ Y R +TH+K+F +R+ + K ++ + E + + Y + Sbjct: 181 DGILNIIKYFFSIEFNEDDMSYDRLLTHLKYFAQRVVSRKNAIDEEEKSFLEIVKTNYKE 240 Query: 244 AMDGAFKIKEYINQ 257 A KIK +I + Sbjct: 241 AYRCVGKIKSFIEK 254 >L0154 [K] COG3711 Transcriptional antiterminator Length = 269 Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 149/254 (58%), Gaps = 3/254 (1%) Query: 5 IKIKKVLNSSVVLVEDEQNKEYILFGKGIGYGQKEGNIVEEHKADQVFVPVENVKVKEYL 64 +KIKKVLN++VV+ +++ N+E IL G G+G+G+K G +VE+ K +++F + + + Sbjct: 5 VKIKKVLNNNVVIAQND-NEETILMGLGLGFGKKAGEVVEDKKIEKIFALKVTSEQQNFS 63 Query: 65 SVLDTTPPVYAELTGRIVAYAERKLQTKLNTGIYFTLMDHLLFAVERYYKKIAITNKVFW 124 +L P EL+ +A A+ K ++ + DHL A+ R I I N + W Sbjct: 64 ELLSEIPSGIVELSILTLAKAKTKFDKTISDTVLVAFADHLNAAIIREKDNITIKNFLLW 123 Query: 125 EIKNYYAEEYEIGLFALKLIKEKLQIEMPKEEAANIAFHLINAQSGEKESKDGMKMAKMI 184 +IK ++ EE+ + L L+ ++EKL I +P++EA +A H++N G ++ K++ Sbjct: 124 DIKRFFPEEFALCLETLQKVQEKLNISLPEDEAGFLAMHIVNGTLGSGHEY-ATELTKLM 182 Query: 185 GSIVNLVRYSMNIDMDTENVHYTRFVTHVKFFVERLYTD-KMLEVTDNILFEQIASLYPQ 243 I+ ++Y++ ++ + +++++ RF+TH+KFF ER+ ++ K E TD LF I YP+ Sbjct: 183 EEILTTLKYTLQVNFNEQDIYFQRFITHLKFFTERILSNTKSDESTDEDLFLLITRKYPR 242 Query: 244 AMDGAFKIKEYINQ 257 A G K ++N+ Sbjct: 243 AYIGTKKSVSFLNR 256 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,381,125 Number of extensions: 764033 Number of successful extensions: 1567 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 1547 Number of HSP's successfully gapped: 18 Length of query: 264 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 160 Effective length of database: 26,383,695 Effective search space: 4221391200 Effective search space used: 4221391200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)