BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0412.0013.p (266 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cgl2406 [G] COG0395 ABC-type sugar transport system, permease co... 172 5e-43 BS_amyC [G] COG0395 ABC-type sugar transport system, permease co... 158 7e-39 SP1895 [G] COG0395 ABC-type sugar transport system, permease com... 152 6e-37 MYPU_1000 [G] COG0395 ABC-type sugar transport system, permease ... 145 7e-35 TM0430 [G] COG0395 ABC-type sugar transport system, permease com... 144 1e-34 >Cgl2406 [G] COG0395 ABC-type sugar transport system, permease component Length = 304 Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 90/271 (33%), Positives = 160/271 (59%), Gaps = 12/271 (4%) Query: 7 CVGAVISFF------PIYLAIINSVKTQGEMFASFIALP---TKLHFENYSQAFDKINLL 57 V A+++FF PI INS K++ + + +LP T + FEN+ K L Sbjct: 35 VVYAILAFFTIVFLGPILFIFINSFKSKFAISSDPFSLPIGETWVGFENFMVGLTKQGFL 94 Query: 58 HSTVNXXXXXXXXXXXXXFCAALAGYKLSRTSGRLSAAIFSLFIASMLVPFHSIMIPLTR 117 +T+ F +A+ Y ++R + ++ LF+ SM++PF +M P + Sbjct: 95 EATLWSFIITILSVIVIVFFSAMTAYYITRVKTWWTNLLYYLFVVSMIIPFQMVMFPTVK 154 Query: 118 MAKALHVSGSTYGLALIYIGLGVNMAIFLYHGFVKSIPRELEEAARMDGCGEFQTFFRII 177 +A LH++ G+ ++Y+G G +++F++ GFVKSIP ++EEAA +DGCG Q +FR++ Sbjct: 155 IADMLHLNNPI-GIVVLYLGFGSGLSVFMFAGFVKSIPLDVEEAAMIDGCGPLQNYFRVV 213 Query: 178 FPLLVPITVTIAILDFLWIWNDFLLPLLMLTDANKY-TLILSTNTLFGEY-NKEWSLILA 235 +P+L P +T+AIL+ +W+WND+LLP L++ + +Y T+ + + G N++ ++A Sbjct: 214 WPMLKPTAITVAILNAMWVWNDYLLPYLVIGLSTRYKTIPVVIQSFVGSNGNRDTGAMMA 273 Query: 236 ALVLTALPVIVIYGFFQKFIMQGIAEGAIKG 266 LVL +P+++ Y Q+ I++G+A GA+KG Sbjct: 274 MLVLAIIPIVIFYFSTQRHIIEGVAAGAVKG 304 >BS_amyC [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 95/269 (35%), Positives = 155/269 (57%), Gaps = 6/269 (2%) Query: 1 LITLFLCVGAVISFFPIYLAIINSVKTQGEMFASFIALPTKLHFENYSQAFDKINLLHST 60 +ITL + A F P Y+ + S+K +G+ + +I P + F N+S+A+++ +L +S Sbjct: 11 IITLLAAIVACAHFIPFYILLTTSLKAKGDYSSKWI-FPADISFHNFSEAWERASLGNSF 69 Query: 61 VNXXXXXXXXXXXXXFCAALAGYKLSRTSGRLSAAIFSLFIASMLVPFHSIMIPLTRMAK 120 +N +LA Y L+R +L+ A+F+L I+ M++P + M+PL RM Sbjct: 70 INTMIITGFSALLLIIFGSLAAYPLARRETKLNKAVFALLISIMIIPPLTSMVPLYRMVV 129 Query: 121 ALHVSGSTYGLALIYIGLGVNM--AIFLYHGFVKS-IPRELEEAARMDGCGEFQTFFRII 177 + +T+ +A I+I M +FLY GF++S IP+EL EAAR+DG G + FF I+ Sbjct: 130 DAGMV-NTHAIA-IFINTAAYMPLTVFLYSGFIRSTIPKELVEAARIDGAGMLKIFFTIV 187 Query: 178 FPLLVPITVTIAILDFLWIWNDFLLPLLMLTDANKYTLILSTNTLFGEYNKEWSLILAAL 237 FPLL PIT TI I+ ++IWND+ + L D TL ++ FGE L+ AA Sbjct: 188 FPLLKPITATICIISCVFIWNDYQFAIFFLQDQKVQTLTVAMAGFFGENANNLHLVAAAA 247 Query: 238 VLTALPVIVIYGFFQKFIMQGIAEGAIKG 266 ++ LP++V++ QK+ + G++ GA+KG Sbjct: 248 LMAMLPMVVLFLALQKYFIAGLSSGAVKG 276 >SP1895 [G] COG0395 ABC-type sugar transport system, permease component Length = 278 Score = 152 bits (384), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 88/267 (32%), Positives = 149/267 (55%), Gaps = 8/267 (2%) Query: 4 LFLCVGAVISFFPIYLAIINSVKTQGEMFASFIALPTKLHFENYSQAF-DKINLLHSTVN 62 + L +G+V+ P+ + +S K ++ +F PT ++N+S+ D I + N Sbjct: 15 ILLILGSVLILVPLLATLFSSFKPTKDIVDNFFGFPTNFTWDNFSRLLADGIGGYYW--N 72 Query: 63 XXXXXXXXXXXXXFCAALAGYKLSRTSGRLSA--AIFSLFIASMLVPFHSIMIPLTRMAK 120 +A Y ++R + A +++L I + VPF IMIP+T M Sbjct: 73 SVVITVLSLLAVMIFIPMAAYSIARNMSKRKAFTIMYTLLILGIFVPFQVIMIPITVMMS 132 Query: 121 ALHVSGSTYGLALIYIGLGVNMAIFLYHGFVK-SIPRELEEAARMDGCGEFQTFFRIIFP 179 L ++ +T+GL L+Y+ + +FLY G++K SIP L+EAA +DG +F T+FRIIFP Sbjct: 133 KLGLA-NTFGLILLYLTYAIPQTLFLYVGYIKISIPESLDEAAEIDGANQFTTYFRIIFP 191 Query: 180 LLVPITVTIAILDFLWIWNDFLLPLLMLT-DANKYTLILSTNTLFGEYNKEWSLILAALV 238 ++ P+ T I++ LW WNDF+LPLL+L D+ +TL L G+Y ++ A+ V Sbjct: 192 MMKPMHATTMIINALWFWNDFMLPLLVLNRDSKMWTLPLFQYNYAGQYFNDYGPSFASYV 251 Query: 239 LTALPVIVIYGFFQKFIMQGIAEGAIK 265 + + + ++Y FFQ+ I+ G++ GA+K Sbjct: 252 VGIISITIVYLFFQRHIISGMSNGAVK 278 >MYPU_1000 [G] COG0395 ABC-type sugar transport system, permease component Length = 288 Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 146/255 (57%), Gaps = 5/255 (1%) Query: 15 FPIYLAIINSVKTQGEMFASFI-ALPTKLHFENYSQAFDKINLLHSTVNXXXXXXXXXXX 73 FP +L S K E+ I ALP+K NY +AF +N S Sbjct: 35 FPYFLMTNTSFKNITELITKNIFALPSKYEGPNYQRAFQALNFAESFSVSLLVTIVSNIS 94 Query: 74 XXFCAALAGYKLSRTSGRLSAAIFSLFIASMLVPFHSIMIPLTRMAKALHVSGSTYGLAL 133 F +++ ++L+R+ +S IF +F+ +++VPF +IM+PL + + + +GL Sbjct: 95 IIFFSSITAWQLARSKRLISKIIFYMFLITIIVPFQAIMLPLIYLMGKMKFL-NLFGLIF 153 Query: 134 IYIGLGVNMAIFLYHGFVKSIPRELEEAARMDGCGEFQTFFRIIFPLLVPITVTIAILDF 193 +Y G G+ ++IF+ HGF+ +IP LEE ++++G + +F+II PLL PI T+AI++ Sbjct: 154 MYTGFGMPISIFMMHGFLSNIPLSLEEVSKVEGYRPIRVYFKIILPLLKPIIATVAIINT 213 Query: 194 LWIWNDFLLP-LLMLTDANK--YTLILSTNTLFGEYNKEWSLILAALVLTALPVIVIYGF 250 +WIWNDFLLP L+ L++++ T+I L G Y +++ I+A L + +P+++ + Sbjct: 214 IWIWNDFLLPYLVYLSNSHSPTTTIIRLQEGLVGTYGTDFTAIMAGLTILIIPIVIFFIV 273 Query: 251 FQKFIMQGIAEGAIK 265 QK I+ GI GAIK Sbjct: 274 MQKNIISGITNGAIK 288 >TM0430 [G] COG0395 ABC-type sugar transport system, permease component Length = 271 Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/266 (32%), Positives = 140/266 (52%), Gaps = 8/266 (3%) Query: 4 LFLCVGAVISFFPIYLAIINSVKTQGEMFA-SFIALPTKLHFENYSQAFDKINLLHSTVN 62 +F+ V+ P++ A+++S K E+++ P K E Y + +LL N Sbjct: 9 IFIVFMLVVFMLPVFYAVVSSFKPMSEIYSYPPTIFPKKPSLEGYINVIKEYDLLTYLRN 68 Query: 63 XXXXXXXXXXXXXFCAALAGYKLSRTSGRLSAAIFSLFIASMLVPFHSIMIPLTRMAKAL 122 + + GY L++ + S+F +M V IM+PL + ++L Sbjct: 69 TLFVATVATVITVLVSVMTGYGLAKGKFWGIRPVNSMFTMTMFVSAQVIMVPLFVVIRSL 128 Query: 123 HVSGSTYGLAL--IYIGLGVNMAIFLYHGFVKSIPRELEEAARMDGCGEFQTFFRIIFPL 180 + S +GL + +Y G+ MA+ ++K IP EL E+A++DG E+Q F+RI+FPL Sbjct: 129 GLINSLWGLIIPAVYTPTGMFMAV----QYMKDIPDELLESAKIDGANEWQIFWRIVFPL 184 Query: 181 LVPITVTIAILDFLWIWNDFLLPLLMLTDANKYTLILSTNTLFGEY-NKEWSLILAALVL 239 P+ +AI F W WNDF+LPLL++ N YTL L+ T+ EY EW+ ILA L Sbjct: 185 SKPLVAALAIFSFTWRWNDFVLPLLVVNRRNLYTLQLALATIQEEYGGAEWNTILAFSTL 244 Query: 240 TALPVIVIYGFFQKFIMQGIAEGAIK 265 T +P ++I+ FQ+ M+GI G +K Sbjct: 245 TIIPTLIIFLLFQRLFMKGIMAGGLK 270 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.144 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,856,192 Number of extensions: 582732 Number of successful extensions: 4031 Number of sequences better than 1.0e-05: 168 Number of HSP's gapped: 3868 Number of HSP's successfully gapped: 168 Length of query: 266 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 161 Effective length of database: 26,268,361 Effective search space: 4229206121 Effective search space used: 4229206121 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)