BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0412.0011.p (437 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1897 [G] COG1653 ABC-type sugar transport system, periplasmic ... 82 2e-15 BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic... 75 2e-13 VCA1033 [G] COG1653 ABC-type sugar transport system, periplasmic... 69 2e-11 TP0737 [G] COG1653 ABC-type sugar transport system, periplasmic ... 62 2e-09 BS_msmE [G] COG1653 ABC-type sugar transport system, periplasmic... 60 6e-09 >SP1897 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 419 Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 84/359 (23%), Positives = 151/359 (42%), Gaps = 33/359 (9%) Query: 7 GLLCTFXXXXXXXGCSSNSGGNEAASTGENTGSGXXXXAAKSVTLKMFIAQPRFKEQYDN 66 GLL T G SN G A +VT++ F + + + Sbjct: 8 GLLATTGLALFGLGACSNYG----------------KSADGTVTIEYFNQKKEMTKTLEE 51 Query: 67 YIADFVKKEKTDKNIDVSVQLEMPTADNAKQILKTRLASNDAPDIFAIHAIN-EIPSYYK 125 DF EK + I V V + +P NA ++LKTR+ + D PD+ I+ + E+ + K Sbjct: 52 ITRDF---EKENPKIKVKV-VNVP---NAGEVLKTRVLAGDVPDVVNIYPQSIELQEWAK 104 Query: 126 AGYLEDLSSQPFVGKLLDSVKPSVTTTDGKVVALPLETLSWGYLYNKTIFREQGLTPPTT 185 AG EDLS++ ++ ++ + + KV +P ++G YNK F E GL P T Sbjct: 105 AGVFEDLSNKDYLKRVKNGYAEKYAVNE-KVYNVPFTANAYGIYYNKDKFEELGLKVPET 163 Query: 186 LTEMKTVIEKLKAKKITPFVLSYKESWI----PQLVLPLAVGGMIKTKDPEFVNKMNKDE 241 E + +++ + AK TPF ++ ++W QL A GG + ++ N + Sbjct: 164 WDEFEQLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEANQYLRYSQPNAIK 223 Query: 242 GSFTEMKSAIFDVFDLINANGTEKATEVXXXXXXXXXXXXXXXMWLM--GPWYAETILKS 299 S MK I V D++ NG+++ + + G W I + Sbjct: 224 LSDPIMKDDI-KVMDILRINGSKQKNWEGAGYTDVIGAFARGDVLMTPNGSWAITAINEQ 282 Query: 300 NPDLDFGVAPLPINDDANATLINLSASTSLAVSPTSKNKEVARDFLNYVLDDQASNAFF 358 P+ G +P + + + + + ++S T+K+ + A F+ Y+ + ++ Sbjct: 283 KPNFKIGTFMIPGKEKGQSLTVG-AGDLAWSISATTKHPKEANAFVEYMTRPEVMQKYY 340 >BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 422 Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 114/455 (25%), Positives = 180/455 (39%), Gaps = 65/455 (14%) Query: 1 MKKMNKGLLCTFXXXXXXXGCSSNSGGNEAASTGENTGSGXXXXAAKSVTLKMFIAQPRF 60 MKKM L+ GCSS S A VTLK F P Sbjct: 1 MKKMLLFLIIAAVSMLTIAGCSSQSSS-----------------ADGKVTLKFFHRWP-- 41 Query: 61 KEQYDNYIADFVKKEKTDKNIDVSVQLEMPTADNAKQILKTRLASNDAPDI-------FA 113 KE +Y + VK+ + D + D+ +Q+E D+ K +K L + PDI FA Sbjct: 42 KEPEKSYFEEVVKEFEKD-HPDIDIQIEAVLNDSYKDKIKVMLGTTSPPDIYFSWSDEFA 100 Query: 114 IHAIN-----EIPSYYKAGYLEDLSSQPFVGKLLDSVKPSVT--TTDGKVVALPLETLSW 166 I ++ SYYK D SSQ V+ +T T + K +P + + Sbjct: 101 FKFIRGNKALDLSSYYKND--TDWSSQ--------LVQSQITPFTYENKQYGVPWQMDAK 150 Query: 167 GYLYNKTIFREQGLTPPTTLTEMKTVIEKLKAKKITPFVLSYKESWIPQLVLPLAVGGMI 226 + YNK IF++ L PP T E+ V +KLK TP K +W + M+ Sbjct: 151 SFFYNKDIFQKLNLDPPKTWDELIDVSKKLKEHGYTPISFGTKATWTISHYIGTLNQRMV 210 Query: 227 --KTKDPEFVNKMNK--DEGSFTEMKSAIFDVFDLINANGTEKATEVXXXXXXXXXXXXX 282 KT++ ++ K + DEG + + + ++ N + E Sbjct: 211 DEKTREKDYNAKTGEFTDEG-YVKALEKLQELMPYFNKHVNSVDHEYVRQQFKSGKSAMI 269 Query: 283 XXMWLMGPWYAETI-LKSNPDLDFGVAPLP-INDDANATLINLSASTSLAVSPTSKNKEV 340 YAET +K ++ G+ P P I+ ++ A +S +K+ + Sbjct: 270 ---------YAETAEIKLVEPVNLGMFPFPEISGQKGSSEALTGAPEGFMISSRTKHPKE 320 Query: 341 ARDFLNYVLDDQASNAFFQSL-KFNPVSTVHTYENYPWI-TEATTYVKAGKSVQ---DPA 395 A +FL ++ + + + K++ V T EN I EA ++ KS+ D Sbjct: 321 AMEFLQFLTSKRMGEKLVKDVGKYSAVQGTATEENATAIQREAVQHIVDAKSMVPWFDMD 380 Query: 396 IPQSVKDEVGKGLQAYYAGQMSQDDVLKALDKAWK 430 + V D G+Q G M+ V+KA+ KA K Sbjct: 381 VDVEVADAYLTGVQQMLGGDMTPQQVMKAVQKAAK 415 >VCA1033 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 458 Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/349 (19%), Positives = 134/349 (38%), Gaps = 14/349 (4%) Query: 94 NAKQILKTRLASNDAPDIFAIHAINEIPSYYKAGYLEDLSSQPFVGKLLDSVK-PSVTTT 152 N L L + A D+ ++ + +KAG+L +++ + + P T + Sbjct: 61 NYTPTLWENLKAGKAGDLITCRPFDDSLALFKAGHLAEITEMAGMENFPSFAQAPWQTDS 120 Query: 153 DGKVVALPLETLSWGYLYNKTIFREQGLTPPTTLTEMKTVIEKLKAK-KITPFVLSYKES 211 + +P+ ++ G+ YNK IF E GL+ P T + TV++K+KA + P +S ES Sbjct: 121 GAQTFCVPMASVIHGFFYNKKIFNELGLSVPQTREQFFTVLDKVKADGRYIPLSMSGSES 180 Query: 212 WIPQLVLPLAVGGMIKTKDPEFVNKMNKDEGSFTEMKSAIFDVFDLINANGTEKATEVXX 271 W+ + +G + + +N E +F+ A E Sbjct: 181 WVASELGYQNIGPNYWKGEDGRLALINGQEHLDDSQYVKVFEELARWRAYLGEDGELRDY 240 Query: 272 XXXXXXXXXXXXXMWLMGPWYAETILKSNPDLDFGVAPLPINDDANATLINLSASTSLAV 331 +++ G W I +DFGV P+ + + + Sbjct: 241 GTSNELFTSGKAALYVAGSW---EIAPFTDKVDFGVMRPPVAKQGDGCFFTDHTDIGMGM 297 Query: 332 SPTSKNKEVARDFLNYVLDDQASNAFFQSL--------KFNPVSTVHTYENYPWITEATT 383 +P SKN + A FL ++ + + + SL F V+ E W + + Sbjct: 298 NPASKNPQAAMAFLQWLTTPEFAELYTNSLPGFFSLSNHFFDVTNPAAREMMEWRDQCDS 357 Query: 384 YVKAGKSVQDPAIPQSVKDEVGKGLQAYYAGQMSQDDVLKALDKAWKSY 432 ++ + P+ + DE+ + QA G+M+ + L++ K + Sbjct: 358 TIRVATQILSRGQPK-LGDELAEVSQAVLVGKMTPTAAAERLEQGLKRW 405 >TP0737 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 436 Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 84/349 (24%), Positives = 137/349 (39%), Gaps = 31/349 (8%) Query: 61 KEQYDNYIADFVKKEKTDKNIDVSVQLEMPTADNAKQILKTRLASNDAPDIFAIHAINEI 120 ++ Y + + + K + ++ I V+V E D +L RLA APD+ + + Sbjct: 48 EKHYSSGLQNVFTKLELEEGIAVTV--ETIQDDQYPTVLHARLADGTAPDVVEV----SL 101 Query: 121 PSYYKAG---YLEDLSSQPFVGKLLDSVKPSVTTTDGKVVALPLETLSW--GYLYNKTIF 175 PS + Y DLS + ++ LL + P T GK ALPL YNK +F Sbjct: 102 PSLHALDPYLYFVDLSKEAWIPDLL--IPP--TDPYGKTFALPLNCAVSINALFYNKDLF 157 Query: 176 REQGLTPPTT---LTEMKTVIEKLKAKKITPFVLSYKESWIPQLVLPLAVGGMIKTKDP- 231 G++ P + L E +I K I P LS ES+ P +L A+ ++ + Sbjct: 158 DRYGISEPKSWNELLESCALIVK-SGISIVPLALSTTESF-PHTLLADAITKVLGEQGAR 215 Query: 232 EFVNKMNKDEGSFTEMKS------AIFDVFDLINANGTEKATEVXXXXXXXXXXXXXXXM 285 + V + D +T ++ A ++F N + V M Sbjct: 216 DLVKRATDDSIDWTHERALYPVLGAYLELFKRGYVNKHHRTARVREIIHDFTRDRIA--M 273 Query: 286 WLMGPWYAETILKSNPDLDFGVAPLPINDDANATLINLSASTSLAVSPTSKNKEVARDFL 345 + A+ I+K P ++ G LPI ++A L LAV S A L Sbjct: 274 YFGSHLVADAIIKERPGINLGACVLPITENAQDVLTGSLEVQGLAVHKKSARVATACRAL 333 Query: 346 NYVLDDQASNAFFQSLKFNPVSTVHTYENYPWITEAT--TYVKAGKSVQ 392 + + N+FF+ K P T P A ++++ GK +Q Sbjct: 334 SVLASAAYQNSFFEEHKGLPAFRNTTSAVIPACLSALFKSHIEKGKVIQ 382 >BS_msmE [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 426 Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 74/317 (23%), Positives = 127/317 (40%), Gaps = 30/317 (9%) Query: 45 AAKSVTLKMFIAQPRFKEQYDNYIADFVKKEKTDKNIDVSVQLEMPTADNAKQILKTRLA 104 A K++T+ ++ ++ + A F K+ D+ V L P D + +++ R+A Sbjct: 29 AKKTLTIYSTMSTDSERDTFRKLAAAFEKEHS-----DIHVSLHFPGND-YENMMRVRMA 82 Query: 105 SNDAPDIFAIHAINEIPSYYKAGYLEDLSSQPFVGKLLDSVKPSVTTTDGKVVALPLETL 164 +ND PD+F H +I Y DL + L ++ + GKV A P+ Sbjct: 83 ANDLPDLFDTHGWGKIRY---GEYTADLRDMKWTQDLDPNLNSILKNKSGKVYAYPINQA 139 Query: 165 SWGYLYNKTIFREQGLTPPTTLTE----MKTVIEKLKAKKITPFVLS-YKESWIPQLVLP 219 G YN+ I G+ PP T+ + ++T+ EK K I PF + Y +S Q Sbjct: 140 KDGLAYNRNILDRYGIAPPETMDDFIKALRTIKEKSKG-SIVPFWFAGYDKSSFAQYYDQ 198 Query: 220 LAVGGMIKTKDPEFVNKMNKDEGSFTEMK----SAIFDVFD---LINANG-TEKATEVXX 271 A +I DP K G+F K S I LIN + T K +++ Sbjct: 199 FATPLLI--TDPAHNEKKQLINGTFQWSKFTYLSEILKQMQKEKLINIDAVTAKKSQLIE 256 Query: 272 XXXXXXXXXXXXXMWLMGPWYAETILKSNPDLDFGVAPLPINDDANATLINLSASTSLAV 331 + G + + + NP++ G+ P P + + +LA Sbjct: 257 LMAQNKIAFT-----MQGGTLGQDVAQINPNVKVGIIPTPAIHPGDDPIWIGGERYTLAA 311 Query: 332 SPTSKNKEVARDFLNYV 348 S + A+DF+ ++ Sbjct: 312 WKDSPQLKEAKDFIAFM 328 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.130 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 29,744,535 Number of extensions: 1138270 Number of successful extensions: 1884 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 1889 Number of HSP's successfully gapped: 11 Length of query: 437 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 328 Effective length of database: 25,807,025 Effective search space: 8464704200 Effective search space used: 8464704200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 117 (49.7 bits)