BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0411.0005.p (291 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO0456 [K] COG2207 AraC-type DNA-binding domain-containing prot... 82 7e-16 PAE2839 [C] COG0243 Anaerobic dehydrogenases, typically selenocy... 79 6e-15 mll1128 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, ... 79 6e-15 aq_217 [C] COG0243 Anaerobic dehydrogenases, typically selenocys... 79 6e-15 CAC3396 [L] COG2816 NTP pyrophosphohydrolases containing a Zn-fi... 79 6e-15 >YPO0456 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 288 Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 23/221 (10%) Query: 47 FQAIMGETIGSYIRTRRLTQAAWDLVHSEKKILDIGVSLYFETAESFTRAFKDRYGMTPT 106 F+ + G IG+YIR RRL++AA L + + ILDI + F++ ++FTRAFK ++ TP Sbjct: 42 FKDVTGNAIGAYIRARRLSKAAVALRLTSRPILDIALQYRFDSQQTFTRAFKKQFAQTPA 101 Query: 107 EYRKNGIDVLIGNRPPAQISDNIVHPYADLSPQIVTVPETYTMGI--------RFITTIS 158 YR+ G PP ++ Y P+ +T+PE + +GI I+T Sbjct: 102 LYRRAEDWHSSGICPPIRLGT-----YTLPQPEFITLPEQHLVGITQSYSCTLEQISTHR 156 Query: 159 RNESIAMWQLF---NQQIPDTFAGTRYGIFEAGETCAADVFNPQSETTAFVGIEFPKEQP 215 + WQ + Q+P G + + ++F + + P+ QP Sbjct: 157 AELRLHFWQQYLGDADQLPPVLYGLHHSRPNPEKDDEQEIFYTTAIEPQHIPCNVPEGQP 216 Query: 216 ILRGMERKTIRGGKYARFIHKGIVKDLMQTYHYIWGVWFPK 256 ++ ++GG+Y +F + G + L ++G P+ Sbjct: 217 VI-------LQGGEYVQFSYDGPLDGLQNFILTLYGTILPQ 250 >PAE2839 [C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing Length = 289 Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 16/254 (6%) Query: 47 FQAIMGETIGSYIRTRRLTQAAWDLVHSEKKILDIGVSLYFETAESFTRAFKDRYGMTPT 106 F+ + G IG+YIR RRL+++A L + + ILDI + F++ ++FTRAFK ++ TP Sbjct: 42 FKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPA 101 Query: 107 EYRKNGIDVLIGNRPPAQISDNIV--HPYADLSPQ-IVTVPETYTMGIRFITTISRNESI 163 YR++ G RPP ++ + + H + L ++ V ++Y+ + I+ Sbjct: 102 LYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRY 161 Query: 164 AMWQLFNQQIPDTFAGTRYGIFEAGETCAADVFNPQSETTAFVGIEFPKEQP---ILRGM 220 W F P T YG+ E + D E F ++Q +L G Sbjct: 162 QFWHDFLGNAP-TIPPVLYGLNETRPSQDKD-----DEQEVFYTTALAQDQADGYVLTG- 214 Query: 221 ERKTIRGGKYARFIHKGIVKDLMQTYHYIWGVWFPKSGYELDNRDDFECY---TERFAGE 277 ++GG+Y F ++G+ + + ++G P D E Y + AG+ Sbjct: 215 HPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGD 274 Query: 278 NIESSEIDIYFPIK 291 + ++ PI+ Sbjct: 275 RPINLRCELLIPIR 288 >mll1128 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Length = 289 Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 16/254 (6%) Query: 47 FQAIMGETIGSYIRTRRLTQAAWDLVHSEKKILDIGVSLYFETAESFTRAFKDRYGMTPT 106 F+ + G IG+YIR RRL+++A L + + ILDI + F++ ++FTRAFK ++ TP Sbjct: 42 FKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPA 101 Query: 107 EYRKNGIDVLIGNRPPAQISDNIV--HPYADLSPQ-IVTVPETYTMGIRFITTISRNESI 163 YR++ G RPP ++ + + H + L ++ V ++Y+ + I+ Sbjct: 102 LYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRY 161 Query: 164 AMWQLFNQQIPDTFAGTRYGIFEAGETCAADVFNPQSETTAFVGIEFPKEQP---ILRGM 220 W F P T YG+ E + D E F ++Q +L G Sbjct: 162 QFWHDFLGNAP-TIPPVLYGLNETRPSQDKD-----DEQEVFYTTALAQDQADGYVLTG- 214 Query: 221 ERKTIRGGKYARFIHKGIVKDLMQTYHYIWGVWFPKSGYELDNRDDFECY---TERFAGE 277 ++GG+Y F ++G+ + + ++G P D E Y + AG+ Sbjct: 215 HPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGD 274 Query: 278 NIESSEIDIYFPIK 291 + ++ PI+ Sbjct: 275 RPINLRCELLIPIR 288 >aq_217 [C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing Length = 289 Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 16/254 (6%) Query: 47 FQAIMGETIGSYIRTRRLTQAAWDLVHSEKKILDIGVSLYFETAESFTRAFKDRYGMTPT 106 F+ + G IG+YIR RRL+++A L + + ILDI + F++ ++FTRAFK ++ TP Sbjct: 42 FKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPA 101 Query: 107 EYRKNGIDVLIGNRPPAQISDNIV--HPYADLSPQ-IVTVPETYTMGIRFITTISRNESI 163 YR++ G RPP ++ + + H + L ++ V ++Y+ + I+ Sbjct: 102 LYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRY 161 Query: 164 AMWQLFNQQIPDTFAGTRYGIFEAGETCAADVFNPQSETTAFVGIEFPKEQP---ILRGM 220 W F P T YG+ E + D E F ++Q +L G Sbjct: 162 QFWHDFLGNAP-TIPPVLYGLNETRPSQDKD-----DEQEVFYTTALAQDQADGYVLTG- 214 Query: 221 ERKTIRGGKYARFIHKGIVKDLMQTYHYIWGVWFPKSGYELDNRDDFECY---TERFAGE 277 ++GG+Y F ++G+ + + ++G P D E Y + AG+ Sbjct: 215 HPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGD 274 Query: 278 NIESSEIDIYFPIK 291 + ++ PI+ Sbjct: 275 RPINLRCELLIPIR 288 >CAC3396 [L] COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding Length = 289 Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 16/254 (6%) Query: 47 FQAIMGETIGSYIRTRRLTQAAWDLVHSEKKILDIGVSLYFETAESFTRAFKDRYGMTPT 106 F+ + G IG+YIR RRL+++A L + + ILDI + F++ ++FTRAFK ++ TP Sbjct: 42 FKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPA 101 Query: 107 EYRKNGIDVLIGNRPPAQISDNIV--HPYADLSPQ-IVTVPETYTMGIRFITTISRNESI 163 YR++ G RPP ++ + + H + L ++ V ++Y+ + I+ Sbjct: 102 LYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRY 161 Query: 164 AMWQLFNQQIPDTFAGTRYGIFEAGETCAADVFNPQSETTAFVGIEFPKEQP---ILRGM 220 W F P T YG+ E + D E F ++Q +L G Sbjct: 162 QFWHDFLGNAP-TIPPVLYGLNETRPSQDKD-----DEQEVFYTTALAQDQADGYVLTG- 214 Query: 221 ERKTIRGGKYARFIHKGIVKDLMQTYHYIWGVWFPKSGYELDNRDDFECY---TERFAGE 277 ++GG+Y F ++G+ + + ++G P D E Y + AG+ Sbjct: 215 HPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGD 274 Query: 278 NIESSEIDIYFPIK 291 + ++ PI+ Sbjct: 275 RPINLRCELLIPIR 288 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.139 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,125,318 Number of extensions: 800977 Number of successful extensions: 3692 Number of sequences better than 1.0e-05: 737 Number of HSP's gapped: 2973 Number of HSP's successfully gapped: 737 Length of query: 291 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 186 Effective length of database: 26,268,361 Effective search space: 4885915146 Effective search space used: 4885915146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 115 (48.9 bits)