BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0407.0021.p
         (112 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DR0033 [J] COG0251 Putative translation initiation inhibitor, yj...   132   1e-31
Rv2704 [J] COG0251 Putative translation initiation inhibitor, yj...   108   3e-24
MT2777.1 [J] COG0251 Putative translation initiation inhibitor, ...   108   3e-24
mll4450 [J] COG0251 Putative translation initiation inhibitor, y...    59   1e-09
mll4402 [J] COG0251 Putative translation initiation inhibitor, y...    59   2e-09

>DR0033 [J] COG0251 Putative translation initiation inhibitor, yjgF family
          Length = 141

 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 0/109 (0%), Positives = 0/109 (0%)

Query: 1   VGYCRAIRIGDRIEVAGTTAIKDGKVFGKGSPYEQTRFILQTIEKALGELGAGLDNVVRT 60
            G          +        +      K         +   ++  +          V  
Sbjct: 43  SGQIPVNPKTGEVPADVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNA 102

Query: 61  RMFVTDISKWEEFGKAHGEFFKEIQPVATMVEVKALIDPDLLIEIEVEA 109
                                                            
Sbjct: 103                                                   151


>Rv2704 [J] COG0251 Putative translation initiation inhibitor, yjgF family
          Length = 141

 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 9/109 (8%), Positives = 19/109 (17%), Gaps = 7/109 (6%)

Query: 1   VGYCRAIRIGDRIEVAGTTAIKDGKVFGKGSPYEQTRFILQTIEKALGELGAGLDNVVRT 60
           +    A                            Q     +T E           ++   
Sbjct: 18  IATENAPAAIGPYVQGVDLGNMIITS-------GQIPVNPKTGEVPADVAAQARQSLDNV 70

Query: 61  RMFVTDISKWEEFGKAHGEFFKEIQPVATMVEVKALIDPDLLIEIEVEA 109
           +  V               F K++   AT+         +        +
Sbjct: 71  KAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARS 119


>MT2777.1 [J] COG0251 Putative translation initiation inhibitor, yjgF family
          Length = 141

 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 9/109 (8%), Positives = 19/109 (17%), Gaps = 7/109 (6%)

Query: 1   VGYCRAIRIGDRIEVAGTTAIKDGKVFGKGSPYEQTRFILQTIEKALGELGAGLDNVVRT 60
           +    A                            Q     +T E           ++   
Sbjct: 18  IATENAPAAIGPYVQGVDLGNMIITS-------GQIPVNPKTGEVPADVAAQARQSLDNV 70

Query: 61  RMFVTDISKWEEFGKAHGEFFKEIQPVATMVEVKALIDPDLLIEIEVEA 109
           +  V               F K++   AT+         +        +
Sbjct: 71  KAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARS 119


>mll4450 [J] COG0251 Putative translation initiation inhibitor, yjgF family
          Length = 141

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 2/106 (1%), Positives = 11/106 (10%), Gaps = 4/106 (3%)

Query: 6   AIRIGDRIEVAGTTAIKDGKVFGKGSPYEQTRFILQTIEKALGELGAGLDNVVRTRMFVT 65
                  +++               +         Q  +             ++    V 
Sbjct: 27  IGPYVQGVDLGNMIITSGQIPVNPKTGEVPADVAAQARQSLDNVKAIVEAAGLKVGDIVK 86

Query: 66  DISKWEEFGKAHGEFFKEIQPVATMVEVKALIDPDLLIEIEVEAAA 111
                ++                                       
Sbjct: 87  TTVFVKDLNDFATVNATYEAFFTEHNATFPARS----CVEVARLPK 128


>mll4402 [J] COG0251 Putative translation initiation inhibitor, yjgF family
          Length = 141

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 5/108 (4%), Positives = 13/108 (12%), Gaps = 1/108 (0%)

Query: 2   GYCRAIRIGDRIEVAGTTAIKDGKVFGKGSPYEQTRFILQTIEKALGELGAGLDNVVRTR 61
                      I            +   G      +      + A     +  +      
Sbjct: 16  KTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPADVAAQARQSLDNVKAIVE 75

Query: 62  MFVTDISKWEEFGKAHGEFFKEIQPVATMVEVKALIDPDLLIEIEVEA 109
                +    +      +        AT                    
Sbjct: 76  AAGLKVGDIVKTTVFVKDLNDFATVNATYE-AFFTEHNATFPARSCVE 122


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.140    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,309,679
Number of extensions: 339033
Number of successful extensions: 792
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 796
Number of HSP's successfully gapped: 25
Length of query: 112
Length of database: 38,378,431
Length adjustment: 79
Effective length of query: 33
Effective length of database: 29,267,045
Effective search space: 965812485
Effective search space used: 965812485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)