BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0019.p (235 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0884 [T] COG0664 cAMP-binding proteins - catabolite gene acti... 150 2e-36 slr0449 [T] COG0664 cAMP-binding proteins - catabolite gene acti... 75 1e-13 YPO0175 [T] COG0664 cAMP-binding proteins - catabolite gene acti... 69 6e-12 STM3466 [T] COG0664 cAMP-binding proteins - catabolite gene acti... 69 8e-12 Zcrp [T] COG0664 cAMP-binding proteins - catabolite gene activat... 68 1e-11 >CAC0884 [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Length = 229 Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 129/223 (57%) Query: 6 AVLQACLLFRGRSVEEIESLLQKMIYTVSEYPRKTVILAEGDKADRLGIVLSGRVEVQKN 65 VL+ C+LF +EI+ L + Y++ EY + I EGD +++GIVLSG VE+QK Sbjct: 7 TVLKHCILFSKIETQEIDHLFSSINYSIKEYYKDETIAIEGDTCNKIGIVLSGCVEIQKI 66 Query: 66 HPTGSGVTIAHLNQGQTIGEAVLFRRNNSVPATVTASDPCTVMFIGKQELLRMFSADTDL 125 + +G +TI L + + GEA++F S P+T+ A T++FI K + ++ S ++ Sbjct: 67 YESGKSLTITTLEESKIFGEAIIFSNKTSYPSTIIACTKSTIIFIPKASISKLCSDNSLF 126 Query: 126 LTRFIENLSERLVLVNRKIEILSAGPLRRRIVAFXXXXXXXXXXALVRLPFSRKEWAEHL 185 L F+ LS +++++N+K++ +S +R +I + ++ S+K+ +E L Sbjct: 127 LNGFMSLLSNKILMLNKKLKNMSYHTIREKISNYILEQYEAQNNLTFKMNKSKKQLSEML 186 Query: 186 NTARPSLSREMGNLRDQGWILFKGREITLLDVDQMRDFIHSDE 228 RPSLSRE NLR++G I F IT+LD++ +++ + + E Sbjct: 187 GIPRPSLSREFINLREEGIIDFDRTSITILDINSLKEILEAAE 229 >slr0449 [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Length = 238 Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 10/226 (4%) Query: 3 PDPAV-LQACLLFRGRSVEEIESLLQKMIYTVSEYPRKTVILAEGDKADRLGIVLSGRVE 61 PD A+ L L+F+ +E + I V Y + V+ EGDK IV SGRV+ Sbjct: 5 PDLALWLSKTLMFQNIDSHHLEMI--TAIAQVKSYGKGDVVFKEGDKPKGFFIVRSGRVK 62 Query: 62 VQKNHPTGSGVTIAHLNQGQTIGEAVLFRRNNSVPATVTASDPCTVMFIGKQELLRMFSA 121 + K P G + ++G+ E +F N PA+ D ++F + L M + Sbjct: 63 IYKIAPGGKEQILRIFHRGEHFAEIAVF-DNLPFPASAATLDQAEMIFFPRSPFLEMLAQ 121 Query: 122 DTDLLTRFIENLSERLVLVNRKIEILSAGPLRRRIVAFXXXXXXXXXXAL------VRLP 175 L + +LS L + IE LS + +R+ ++ + V L Sbjct: 122 HPTLALNMLSSLSRHLRHLTAVIEELSFKDVPQRLASYLLRLGGVDTGTVEVLSLWVTLD 181 Query: 176 FSRKEWAEHLNTARPSLSREMGNLRDQGWILFKGREITLLDVDQMR 221 + + A L T +LSR L+++ I KG EI LLD D++R Sbjct: 182 LPKSQLAAQLGTIPATLSRAFYQLKNEDLIAVKGAEIQLLDCDRLR 227 >YPO0175 [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Length = 210 Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 4/186 (2%) Query: 33 VSEYPRKTVILAEGDKADRLGIVLSGRVEVQKNHPTGSGVTIAHLNQGQTIGEAVLFRRN 92 + +YP K+ ++ +G+KA+ L ++ G V V G + +++LNQG IGE LF Sbjct: 21 IHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG 80 Query: 93 NSVPATVTASDPCTVMFIGKQELLRMFSADTDLLTRFIENLSERLVLVNRKIEILS---- 148 A V A C V I ++ ++ + D+L R ++ RL + + K+ L+ Sbjct: 81 QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSSQMANRLQITSEKVGNLAFLDV 140 Query: 149 AGPLRRRIVAFXXXXXXXXXXALVRLPFSRKEWAEHLNTARPSLSREMGNLRDQGWILFK 208 G + + ++ +++ +R+E + + +R ++ R + L DQ I Sbjct: 141 TGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAH 200 Query: 209 GREITL 214 G+ I + Sbjct: 201 GKTIVV 206 >STM3466 [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Length = 210 Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 4/186 (2%) Query: 33 VSEYPRKTVILAEGDKADRLGIVLSGRVEVQKNHPTGSGVTIAHLNQGQTIGEAVLFRRN 92 + +YP K+ ++ +G+KA+ L ++ G V V G + +++LNQG IGE LF Sbjct: 21 IHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG 80 Query: 93 NSVPATVTASDPCTVMFIGKQELLRMFSADTDLLTRFIENLSERLVLVNRKIEILS---- 148 A V A C V I ++ ++ + D+L R ++ RL + + K+ L+ Sbjct: 81 QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSSQMARRLQVTSEKVGNLAFLDV 140 Query: 149 AGPLRRRIVAFXXXXXXXXXXALVRLPFSRKEWAEHLNTARPSLSREMGNLRDQGWILFK 208 G + + ++ +++ +R+E + + +R ++ R + L DQ I Sbjct: 141 TGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAH 200 Query: 209 GREITL 214 G+ I + Sbjct: 201 GKTIVV 206 >Zcrp [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Length = 210 Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 4/186 (2%) Query: 33 VSEYPRKTVILAEGDKADRLGIVLSGRVEVQKNHPTGSGVTIAHLNQGQTIGEAVLFRRN 92 + +YP K+ ++ +G+KA+ L ++ G V V G + +++LNQG IGE LF Sbjct: 21 IHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG 80 Query: 93 NSVPATVTASDPCTVMFIGKQELLRMFSADTDLLTRFIENLSERLVLVNRKIEILS---- 148 A V A C V I ++ ++ + D+L R ++ RL + + K+ L+ Sbjct: 81 QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDV 140 Query: 149 AGPLRRRIVAFXXXXXXXXXXALVRLPFSRKEWAEHLNTARPSLSREMGNLRDQGWILFK 208 G + + ++ +++ +R+E + + +R ++ R + L DQ I Sbjct: 141 TGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAH 200 Query: 209 GREITL 214 G+ I + Sbjct: 201 GKTIVV 206 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,158,291 Number of extensions: 583446 Number of successful extensions: 1142 Number of sequences better than 1.0e-05: 23 Number of HSP's gapped: 1135 Number of HSP's successfully gapped: 23 Length of query: 235 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 132 Effective length of database: 26,499,029 Effective search space: 3497871828 Effective search space used: 3497871828 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)