BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0018.p (550 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC2750 [C] COG1151 6Fe-6S prismane cluster-containing protein 793 0.0 CAC3428 [C] COG1151 6Fe-6S prismane cluster-containing protein 736 0.0 MJ0765 [C] COG1151 6Fe-6S prismane cluster-containing protein 682 0.0 >CAC2750 [C] COG1151 6Fe-6S prismane cluster-containing protein Length = 530 Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/544 (70%), Positives = 443/544 (81%), Gaps = 20/544 (3%) Query: 4 MFCFQCQEAAKGSGCTIQGVCGKTSEVANLQDLLLYTLKGISIFAQRGRELGITDPATEK 63 MFC+QCQEAA GCT++GVCGKT ++A QDLL+YTLK +S++ R+L + + + Sbjct: 3 MFCYQCQEAAGCKGCTVRGVCGKTEDLAKKQDLLIYTLKVVSLYNVEARKLNLVNKEIDN 62 Query: 64 FITGSMFATITNANFTPEHFTARIREGLALRDQWRNRXXXXXXXXXXXXHDAALWTAGTD 123 +I S+FATITNANF FT RI +G+ +++ + + + AG + Sbjct: 63 YIVDSLFATITNANFDENIFTERIEKGIKYKEELKKQ----------------ISAAGGN 106 Query: 124 EDLLLKAQEVGVLATEHEDIRSLRELLTYGLKGMAAYMEHAAVLGYVEPDAQAFMEKGLA 183 +L K + VGVL+TE+EDIRSLRELLTYG+KGMAAY++HA L Y + + Q FM K LA Sbjct: 107 VNLNEKTEAVGVLSTENEDIRSLRELLTYGIKGMAAYLKHARNLSYEDSNIQGFMSKALA 166 Query: 184 SVLDDTLSGDELTALVLECGKMGVAVMALLDRANTSTYGNPEITKVNIGVGTRPGILISG 243 + LDDTL DEL AL LECGK GV MALLD+ANT TYGNPEITKVNIG PGILISG Sbjct: 167 ATLDDTLGADELVALALECGKYGVDAMALLDKANTETYGNPEITKVNIGTRNNPGILISG 226 Query: 244 HDLKDMESLLKQTEGTGVDVYTHSEMLPAHYYPAFKKYSHFVGNYGNAWWKQNEEFASFN 303 HDLKD+E LLKQTEGTGVDVYTHSEMLPA+YYPAFKKYSHFVGNYGNAWWKQNEEF SFN Sbjct: 227 HDLKDIEELLKQTEGTGVDVYTHSEMLPANYYPAFKKYSHFVGNYGNAWWKQNEEFESFN 286 Query: 304 GPILMTTNCIVPPKDSYINRLYTTGHTGFPGVQHIAAGENGE-KDFTAIIEQAKNCEPPT 362 GPILMTTNCIVPPK SYI+R+YTTG TG+PGV+HI ENGE KDF+AIIE AK C PPT Sbjct: 287 GPILMTTNCIVPPKASYIDRMYTTGVTGYPGVKHI---ENGEPKDFSAIIEHAKKCAPPT 343 Query: 363 ELETGEIVGGFAHAAVMNVADQVVEAVQSGAIKQFFVMAGCDGRMKSRNYYTDFAAELPG 422 E+E GEI+GGFAH V+ +AD+VVEAV+SGAIK+F+VMAGCDGR K+RNYYTDFA LP Sbjct: 344 EIEKGEIIGGFAHNQVIALADKVVEAVKSGAIKRFYVMAGCDGRAKTRNYYTDFAKALPK 403 Query: 423 DTVILTAGCAKYKYNKLALGEIGGIPRVLDAGQCNDSYSLVVIAMKLKEVFGLADINDLP 482 D VILTAGCAKYKYNKL LG+IGGIPRVLDAGQCNDSYSLVVIA+KLKEVFGL DIN+LP Sbjct: 404 DAVILTAGCAKYKYNKLDLGDIGGIPRVLDAGQCNDSYSLVVIALKLKEVFGLNDINELP 463 Query: 483 IAYNIAWYEQKAVIVLLALLYLGVKNIHLGPTLPAFLSPNVAKVLVDTFGISGITTVKED 542 IAYNIAWYEQKAVIVLLALL+LGVKNIHLGPTLPAFLSPNVAKVLVD FGI GIT V++D Sbjct: 464 IAYNIAWYEQKAVIVLLALLHLGVKNIHLGPTLPAFLSPNVAKVLVDNFGIGGITNVEDD 523 Query: 543 MEHF 546 ++ F Sbjct: 524 IKMF 527 >CAC3428 [C] COG1151 6Fe-6S prismane cluster-containing protein Length = 567 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/563 (63%), Positives = 421/563 (74%), Gaps = 19/563 (3%) Query: 4 MFCFQCQEAAKGSGCTIQGVCGKTSEVANLQDLLLYTLKGISIFAQRGRELGITDPATEK 63 MFC+QCQE A GCT++GVCGK VA QDLL+Y KG+++ + G ++G+ D K Sbjct: 3 MFCYQCQETAGCKGCTVKGVCGKDESVAKAQDLLIYVTKGLAVVSNEGMKVGVKDSKVNK 62 Query: 64 FITGSMFATITNANFTPEHFTARIREGLALRDQWRNRXXXX------------------- 104 +I ++F TITNANF + R+RE L +R+ + + Sbjct: 63 YIVENLFTTITNANFDRDSILDRVRETLRIREDLKAKVVKAGGKVGEVKVSGGFFKKLFG 122 Query: 105 XXXXXXXXHDAALWTAGTDEDLLLKAQEVGVLATEHEDIRSLRELLTYGLKGMAAYMEHA 164 DAA WTA + KA++VGVL+TE+EDIRSLREL+TYGLKG++AYM+HA Sbjct: 123 IAKEEMVGPDAATWTADNVIEFDAKAEKVGVLSTENEDIRSLRELITYGLKGLSAYMKHA 182 Query: 165 AVLGYVEPDAQAFMEKGLASVLDDTLSGDELTALVLECGKMGVAVMALLDRANTSTYGNP 224 L Y + FM K LA+ LDD+LS D+L AL LE GK GV MALLD+ANT TYGNP Sbjct: 183 MNLKYDDETVHEFMAKALAATLDDSLSVDQLVALALEAGKFGVNGMALLDKANTETYGNP 242 Query: 225 EITKVNIGVGTRPGILISGHDLKDMESLLKQTEGTGVDVYTHSEMLPAHYYPAFKKYSHF 284 EIT V+IGV PGILISGHDL+D+E LL+QTEGTGVDVYTH EML YYP FKKY +F Sbjct: 243 EITTVDIGVRKNPGILISGHDLRDLEMLLEQTEGTGVDVYTHGEMLAGQYYPKFKKYKNF 302 Query: 285 VGNYGNAWWKQNEEFASFNGPILMTTNCIVPPKDSYINRLYTTGHTGFPGVQHIAAGENG 344 GNYGNAWWKQ EEF FNGPI+MTTNCIV PK SY NRL+TTG TG PG HI A +G Sbjct: 303 AGNYGNAWWKQKEEFEKFNGPIVMTTNCIVIPKASYKNRLFTTGATGMPGCPHIEAKADG 362 Query: 345 EKDFTAIIEQAKNCEPPTELETGEIVGGFAHAAVMNVADQVVEAVQSGAIKQFFVMAGCD 404 KDF+ +I+ AK C PTE+E G+IVGGFAH V+ +AD+VV AV+SGAIK+FFVMAGCD Sbjct: 363 TKDFSEVIKMAKKCSAPTEIEKGQIVGGFAHNQVIALADKVVAAVKSGAIKRFFVMAGCD 422 Query: 405 GRMKSRNYYTDFAAELPGDTVILTAGCAKYKYNKLALGEIGGIPRVLDAGQCNDSYSLVV 464 GR SRNYYT+FA +LP DTVILTAGCAKYKYNKL LG+IGGIPRVLDAGQCNDSYSLVV Sbjct: 423 GRANSRNYYTEFAEKLPKDTVILTAGCAKYKYNKLNLGDIGGIPRVLDAGQCNDSYSLVV 482 Query: 465 IAMKLKEVFGLADINDLPIAYNIAWYEQKAVIVLLALLYLGVKNIHLGPTLPAFLSPNVA 524 IA+KL+EVF L +N+LPI+YNIAWYEQKAVIVLL+LL+LGVKNIHLGPTLPAFLSPNVA Sbjct: 483 IALKLQEVFRLKSVNELPISYNIAWYEQKAVIVLLSLLHLGVKNIHLGPTLPAFLSPNVA 542 Query: 525 KVLVDTFGISGITTVKEDMEHFI 547 KVLVD FGI GIT V++DM+ F+ Sbjct: 543 KVLVDNFGIGGITNVEDDMKMFM 565 >MJ0765 [C] COG1151 6Fe-6S prismane cluster-containing protein Length = 548 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/548 (60%), Positives = 406/548 (74%), Gaps = 10/548 (1%) Query: 2 SEMFCFQCQEAAKGSGCTIQGVCGKTSEVANLQDLLLYTLKGISIFAQRGRELGITDPAT 61 ++MFCFQCQEAAK GCTI+GVCGK VANLQDLL+YT+KG+ +G L D Sbjct: 8 TKMFCFQCQEAAKNEGCTIKGVCGKDDVVANLQDLLIYTIKGLCYVCDKGNYL---DDEV 64 Query: 62 EKFITGSMFATITNANFTPEHFTARIREGLALRDQWRNRXXXXXXXXXXXXHDAALWTAG 121 +I ++F TITN NF + I++G+ALR++ + A W Sbjct: 65 MDYIPKALFVTITNVNFDDKDVINWIKKGVALREKIIEKNNLNKEELPY----CATWAYE 120 Query: 122 TDEDL--LLKAQEVGVLATEHEDIRSLRELLTYGLKGMAAYMEHAAVLGYVEPDAQAFME 179 TDEDL L +EV VLA ++EDIRSL+EL+TYG+KG+ AY+ HA LGY D F+ Sbjct: 121 TDEDLINLANTKEVSVLAEDNEDIRSLKELITYGIKGIGAYLSHAMHLGYNNEDIHKFII 180 Query: 180 KGLASVLDDTLSGDELTALVLECGKMGVAVMALLDRANTSTYGNPEITKVNIGVGTRPGI 239 K ++D + DEL L +E GK V +ALLD+ANT TYG+PEIT+VN+GV RPGI Sbjct: 181 KAFTKIVD-SKDADELFNLAMETGKYAVETLALLDKANTETYGHPEITEVNLGVRDRPGI 239 Query: 240 LISGHDLKDMESLLKQTEGTGVDVYTHSEMLPAHYYPAFKKYSHFVGNYGNAWWKQNEEF 299 LISGHDLKD+E LL+Q++ GVD+YTH EMLPAHYYP FKKY HFVGNYG +W Q EEF Sbjct: 240 LISGHDLKDLEQLLEQSKDAGVDIYTHCEMLPAHYYPFFKKYEHFVGNYGGSWPFQREEF 299 Query: 300 ASFNGPILMTTNCIVPPKDSYINRLYTTGHTGFPGVQHIAAGENGEKDFTAIIEQAKNCE 359 FNGPI+MTTNC+VPPKDSY +R+Y T G+PG++ I E+G KDF+ +IE AK C+ Sbjct: 300 EKFNGPIVMTTNCLVPPKDSYKDRVYVTNEVGYPGLKRIPVKEDGTKDFSEVIEHAKKCK 359 Query: 360 PPTELETGEIVGGFAHAAVMNVADQVVEAVQSGAIKQFFVMAGCDGRMKSRNYYTDFAAE 419 PPT LE G+IVGGFAH V+ +AD+V+EAV+SG I++F VMAGCDGR K+R YYT+FA + Sbjct: 360 PPTPLENGKIVGGFAHNQVLALADKVIEAVKSGKIRKFVVMAGCDGRHKTREYYTEFAKK 419 Query: 420 LPGDTVILTAGCAKYKYNKLALGEIGGIPRVLDAGQCNDSYSLVVIAMKLKEVFGLADIN 479 LP DTVILT GCAKY++ KL LG+I GIPRVLDAGQCNDSYSLV IA+ LK+ FGL D+N Sbjct: 420 LPKDTVILTCGCAKYRFIKLDLGDIDGIPRVLDAGQCNDSYSLVKIALALKDAFGLNDVN 479 Query: 480 DLPIAYNIAWYEQKAVIVLLALLYLGVKNIHLGPTLPAFLSPNVAKVLVDTFGISGITTV 539 +LPIAYNI+WYEQKAV VLLALLYLGVKNI LGPTLPAFLSPNV KVLV+ FGIS I+TV Sbjct: 480 ELPIAYNISWYEQKAVTVLLALLYLGVKNIVLGPTLPAFLSPNVTKVLVEKFGISTISTV 539 Query: 540 KEDMEHFI 547 ED++ + Sbjct: 540 DEDIKRLV 547 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 39,807,097 Number of extensions: 1685469 Number of successful extensions: 2939 Number of sequences better than 1.0e-05: 3 Number of HSP's gapped: 2932 Number of HSP's successfully gapped: 4 Length of query: 550 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 439 Effective length of database: 25,576,357 Effective search space: 11228020723 Effective search space used: 11228020723 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 118 (50.1 bits)