BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0017.p (219 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPy0528 [TK] COG0745 Response regulators consisting of a CheY-li... 179 2e-45 ML0125 [GC] COG1819 Glycosyl transferases, related to UDP-glucur... 177 1e-44 L0125 [TK] COG0745 Response regulators consisting of a CheY-like... 177 1e-44 BH0372 [TK] COG0745 Response regulators consisting of a CheY-lik... 176 2e-44 STM1655 [LKJ] COG0513 Superfamily II DNA and RNA helicases 172 5e-43 >SPy0528 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 236 Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 105/234 (44%), Positives = 144/234 (61%), Gaps = 17/234 (7%) Query: 1 MATILVVEDEKPISDLITMNLKLVGHRFFKAFDGEQMQQILEQEKIDLILLDVMLPVMDG 60 M IL+V+DEKPISD+I NL G+ AFDG + I E+EK DLI+LD+MLP +DG Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDG 60 Query: 61 FEWMRR-RRHPGVPVIFITAKDSLADRITGFELGADDYIIKPFEILELLARINAVLRRS- 118 E + R+ VP+I ++AKDS D++ G E+GADDY+ KPF ELLAR+ A LRR+ Sbjct: 61 LEVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120 Query: 119 -----VKEEEG------FLAGDVEVRLQARKIYKNGQLVELTAREFELLEVLIQNRNIAL 167 V EE G++++ A K+GQ VELT REFELL L + + Sbjct: 121 TIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVM 180 Query: 168 SREKLLELAWGYEFEGDTRTVDVHIRQLRKKL----GWEERINTVYKLGYRLEA 217 +RE LLE+ WGY++ GD RTVDV +R+LR+K+ E I T +GY +++ Sbjct: 181 TREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKS 234 >ML0125 [GC] COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase Length = 233 Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 98/210 (46%), Positives = 134/210 (63%), Gaps = 13/210 (6%) Query: 1 MATILVVEDEKPISDLITMNLKLVGHRFFKAFDGEQMQQILEQEKIDLILLDVMLPVMDG 60 M ILVV+DEKPISD++ NL G F AFDGE+ + ++ + DLILLD+MLP +DG Sbjct: 1 MKKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDG 60 Query: 61 FEWMRR-RRHPGVPVIFITAKDSLADRITGFELGADDYIIKPFEILELLARINAVLRR-- 117 + R R+ P+I ++AKDS D++ G ELGADDY+ KPF ELLARI A LRR Sbjct: 61 LDVAREIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRIN 120 Query: 118 --------SVKEEEGFLAGDVEVRLQARKIYKNGQLVELTAREFELLEVLIQNRNIALSR 169 +VK+E + G++ + YKN + ++LT REFELL L Q+ ++R Sbjct: 121 VAPAESTDNVKKE--LIIGNLRINPAHYAAYKNDKQLDLTHREFELLYYLAQHLGEVITR 178 Query: 170 EKLLELAWGYEFEGDTRTVDVHIRQLRKKL 199 E LLE WGY++ GD RTVDV +R+LR+K+ Sbjct: 179 ENLLETVWGYDYFGDVRTVDVTVRRLREKV 208 >L0125 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 233 Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 98/210 (46%), Positives = 134/210 (63%), Gaps = 13/210 (6%) Query: 1 MATILVVEDEKPISDLITMNLKLVGHRFFKAFDGEQMQQILEQEKIDLILLDVMLPVMDG 60 M ILVV+DEKPISD++ NL G F AFDGE+ + ++ + DLILLD+MLP +DG Sbjct: 1 MKKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDG 60 Query: 61 FEWMRR-RRHPGVPVIFITAKDSLADRITGFELGADDYIIKPFEILELLARINAVLRR-- 117 + R R+ P+I ++AKDS D++ G ELGADDY+ KPF ELLARI A LRR Sbjct: 61 LDVAREIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRIN 120 Query: 118 --------SVKEEEGFLAGDVEVRLQARKIYKNGQLVELTAREFELLEVLIQNRNIALSR 169 +VK+E + G++ + YKN + ++LT REFELL L Q+ ++R Sbjct: 121 VAPAESTDNVKKE--LIIGNLRINPAHYAAYKNDKQLDLTHREFELLYYLAQHLGEVITR 178 Query: 170 EKLLELAWGYEFEGDTRTVDVHIRQLRKKL 199 E LLE WGY++ GD RTVDV +R+LR+K+ Sbjct: 179 ENLLETVWGYDYFGDVRTVDVTVRRLREKV 208 >BH0372 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 222 Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 93/221 (42%), Positives = 142/221 (64%), Gaps = 5/221 (2%) Query: 1 MATILVVEDEKPISDLITMNLKLVGHRFFKAFDGEQMQQILEQEKIDLILLDVMLPVMDG 60 MA IL++EDEK I+ ++ + L+ G+ AF G + + DL+LLDVMLP + G Sbjct: 1 MARILIIEDEKKIARVLQLELEHEGYETDAAFSGSDGLETFQAHAWDLVLLDVMLPELSG 60 Query: 61 FEWMRRRR--HPGVPVIFITAKDSLADRITGFELGADDYIIKPFEILELLARINAVLRR- 117 E +RR R P P+I +TA++S+ D+++G +LGA+DYI KPFEI ELLAR+ A LR Sbjct: 61 LEVLRRIRMTDPVTPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACLRTV 120 Query: 118 SVKE--EEGFLAGDVEVRLQARKIYKNGQLVELTAREFELLEVLIQNRNIALSREKLLEL 175 +E E+ + ++ + + R + + + +ELT +EFELL I+N+ LSRE++L Sbjct: 121 QTRERVEDTLMFQELTINEKTRDVQRGNETIELTPKEFELLVFFIKNKGQVLSREQILTN 180 Query: 176 AWGYEFEGDTRTVDVHIRQLRKKLGWEERINTVYKLGYRLE 216 WG+++ GDT +DV++R LRKKL E + TV +GYRL+ Sbjct: 181 VWGFDYYGDTNVIDVYVRYLRKKLSLTEALQTVRGVGYRLK 221 >STM1655 [LKJ] COG0513 Superfamily II DNA and RNA helicases Length = 457 Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 13/207 (6%), Positives = 33/207 (15%), Gaps = 11/207 (5%) Query: 4 ILVVEDEKPISDLITMNLKLVGHRFFKAFDGEQMQQILEQEKIDLILLDVMLPVMDGFEW 63 L E ++ + + Q + + + L + V Sbjct: 14 QLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRIDVTLFQTQ 73 Query: 64 MRRRR----HPGVPVIFITAKDSLADRITGFELGADDYIIKPFEILELLARINAVLRR-- 117 + L + L+ I Sbjct: 74 ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRL 133 Query: 118 ---SVKEE--EGFLAGDVEVRLQARKIYKNGQLVELTAREFELLEVLIQNRNIALSREKL 172 KE L V ++ R + Sbjct: 134 LDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAA 193 Query: 173 LELAWGYEFEGDTRTVDVHIRQLRKKL 199 + + + + ++ Sbjct: 194 ISGRVQQQPIRIEIDTVDALPAIEQQF 220 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.142 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,118,320 Number of extensions: 671389 Number of successful extensions: 2616 Number of sequences better than 1.0e-05: 420 Number of HSP's gapped: 2132 Number of HSP's successfully gapped: 420 Length of query: 219 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 117 Effective length of database: 26,614,363 Effective search space: 3113880471 Effective search space used: 3113880471 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 114 (48.5 bits)