BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0014.p (319 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll8386 [C] COG0667 Predicted oxidoreductases (related to aryl-a... 217 2e-56 AGl2933_1 [C] COG0281 Malic enzyme 205 8e-53 AGl2936 [G] COG4993 Glucose dehydrogenase 205 8e-53 AGl2977 [S] COG3034 Uncharacterized protein conserved in bacteria 205 8e-53 AGl2992_1 [M] COG1596 Periplasmic protein involved in polysaccha... 205 8e-53 >mll8386 [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Length = 346 Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 25/316 (7%), Positives = 60/316 (18%), Gaps = 15/316 (4%) Query: 1 LGSSGLQVSALGLGTNAFGK--------RADQQTSIDIVHAALGQGINFIDTANIYAGSE 52 + S L+VS LGLGT FG+ ++ + + G Sbjct: 6 IPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLT 65 Query: 53 SERIIGLALEG-RRQEAVLATKAXXXXXXXXXXXXXXXXXXXQELEGSLRRLKTDYVDLY 111 + + R++ ++A+K + + +L Y Sbjct: 66 ETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDY 125 Query: 112 QIHTFDPYTPLEETLRTLDDMVSAGKVRYIGASNYAAWELMKALGISELRNLVKYVSIQC 171 + + + V + Sbjct: 126 LDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFG 185 Query: 172 SYSLADRTPETQLLPLCLDQGIGIIPYFPLAGGILTGKYGGSDAPPAGSRA-QTDPNFSR 230 + L + Q + G+ Sbjct: 186 VMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQ-YEGVELLAYSCLGFGTLTG- 243 Query: 231 FLSKDRI-ALGDAVGGIAAELAASPTALSLAWLMHQPAVSTVIVGATKPAQLQESIQSAA 289 A + + + + ++ L + Sbjct: 244 --KYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPF 301 Query: 290 LALDTGILHRLDEASR 305 +A +D+ Sbjct: 302 VASTLLGATTMDQLKT 317 >AGl2933_1 [C] COG0281 Malic enzyme Length = 353 Score = 205 bits (521), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 121/317 (38%), Positives = 182/317 (57%), Gaps = 15/317 (4%) Query: 1 LGSSGLQVSALGLGTNAFGK---------RADQQTSIDIVHAALGQGINFIDTANIYAGS 51 LG++GL VS L LGT F Q + ++V A++ GINF DTA++Y+ Sbjct: 6 LGNTGLLVSQLCLGTMTFSDGTGIYEHIGDVGQTGADELVKASIDAGINFFDTADVYSAG 65 Query: 52 ESERIIGLALEG---RRQEAVLATKAXXXXXXXXXXXXXXXXXXXQELEGSLRRLKTDYV 108 SER +G + + R E VLATK +E SL+RL+TD++ Sbjct: 66 ASERTLGQSFKNLGIARNEIVLATKVYSRMGSGRNDVGASRGHIMDAVEASLKRLQTDHI 125 Query: 109 DLYQIHTFDPYTPLEETLRTLDDMVSAGKVRYIGASNYAAWELMKALGISELRNLVKYVS 168 DLYQIH D TP+EETLR LDD+V GKVRY+G SN+ AW + ALG+S L ++ + Sbjct: 126 DLYQIHATDTLTPVEETLRALDDLVRQGKVRYVGVSNWQAWRIATALGVSARLGLERFNT 185 Query: 169 IQCSYSLADRTPETQLLPLCLDQGIGIIPYFPLAGGILTGKYGGSDAPPAGSRAQTDPNF 228 +Q YS+A R E +L PL + +G++ + PLAGG+L+G++ ++ P GSR ++ +F Sbjct: 186 LQAYYSIAGRDLERELKPLLDAEKMGLLVWSPLAGGLLSGRFSRANQSPEGSR-RSSFDF 244 Query: 229 SRFLSKDR-IALGDAVGGIAAELAASPTALSLAWLMHQPAVSTVIVGATKPAQLQESIQS 287 + K+R + D + IA SP ++LAWL+ +P V++VIVGA + +QL+++I + Sbjct: 245 P-IVDKERAWNVIDVLKPIAKAHGCSPARIALAWLLAKPVVTSVIVGAKRLSQLEDNIAA 303 Query: 288 AALALDTGILHRLDEAS 304 L + RLD S Sbjct: 304 VGTVLSDDEVARLDAVS 320 >AGl2936 [G] COG4993 Glucose dehydrogenase Length = 353 Score = 205 bits (521), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 121/317 (38%), Positives = 182/317 (57%), Gaps = 15/317 (4%) Query: 1 LGSSGLQVSALGLGTNAFGK---------RADQQTSIDIVHAALGQGINFIDTANIYAGS 51 LG++GL VS L LGT F Q + ++V A++ GINF DTA++Y+ Sbjct: 6 LGNTGLLVSQLCLGTMTFSDGTGIYEHIGDVGQTGADELVKASIDAGINFFDTADVYSAG 65 Query: 52 ESERIIGLALEG---RRQEAVLATKAXXXXXXXXXXXXXXXXXXXQELEGSLRRLKTDYV 108 SER +G + + R E VLATK +E SL+RL+TD++ Sbjct: 66 ASERTLGQSFKNLGIARNEIVLATKVYSRMGSGRNDVGASRGHIMDAVEASLKRLQTDHI 125 Query: 109 DLYQIHTFDPYTPLEETLRTLDDMVSAGKVRYIGASNYAAWELMKALGISELRNLVKYVS 168 DLYQIH D TP+EETLR LDD+V GKVRY+G SN+ AW + ALG+S L ++ + Sbjct: 126 DLYQIHATDTLTPVEETLRALDDLVRQGKVRYVGVSNWQAWRIATALGVSARLGLERFNT 185 Query: 169 IQCSYSLADRTPETQLLPLCLDQGIGIIPYFPLAGGILTGKYGGSDAPPAGSRAQTDPNF 228 +Q YS+A R E +L PL + +G++ + PLAGG+L+G++ ++ P GSR ++ +F Sbjct: 186 LQAYYSIAGRDLERELKPLLDAEKMGLLVWSPLAGGLLSGRFSRANQSPEGSR-RSSFDF 244 Query: 229 SRFLSKDR-IALGDAVGGIAAELAASPTALSLAWLMHQPAVSTVIVGATKPAQLQESIQS 287 + K+R + D + IA SP ++LAWL+ +P V++VIVGA + +QL+++I + Sbjct: 245 P-IVDKERAWNVIDVLKPIAKAHGCSPARIALAWLLAKPVVTSVIVGAKRLSQLEDNIAA 303 Query: 288 AALALDTGILHRLDEAS 304 L + RLD S Sbjct: 304 VGTVLSDDEVARLDAVS 320 >AGl2977 [S] COG3034 Uncharacterized protein conserved in bacteria Length = 353 Score = 205 bits (521), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 121/317 (38%), Positives = 182/317 (57%), Gaps = 15/317 (4%) Query: 1 LGSSGLQVSALGLGTNAFGK---------RADQQTSIDIVHAALGQGINFIDTANIYAGS 51 LG++GL VS L LGT F Q + ++V A++ GINF DTA++Y+ Sbjct: 6 LGNTGLLVSQLCLGTMTFSDGTGIYEHIGDVGQTGADELVKASIDAGINFFDTADVYSAG 65 Query: 52 ESERIIGLALEG---RRQEAVLATKAXXXXXXXXXXXXXXXXXXXQELEGSLRRLKTDYV 108 SER +G + + R E VLATK +E SL+RL+TD++ Sbjct: 66 ASERTLGQSFKNLGIARNEIVLATKVYSRMGSGRNDVGASRGHIMDAVEASLKRLQTDHI 125 Query: 109 DLYQIHTFDPYTPLEETLRTLDDMVSAGKVRYIGASNYAAWELMKALGISELRNLVKYVS 168 DLYQIH D TP+EETLR LDD+V GKVRY+G SN+ AW + ALG+S L ++ + Sbjct: 126 DLYQIHATDTLTPVEETLRALDDLVRQGKVRYVGVSNWQAWRIATALGVSARLGLERFNT 185 Query: 169 IQCSYSLADRTPETQLLPLCLDQGIGIIPYFPLAGGILTGKYGGSDAPPAGSRAQTDPNF 228 +Q YS+A R E +L PL + +G++ + PLAGG+L+G++ ++ P GSR ++ +F Sbjct: 186 LQAYYSIAGRDLERELKPLLDAEKMGLLVWSPLAGGLLSGRFSRANQSPEGSR-RSSFDF 244 Query: 229 SRFLSKDR-IALGDAVGGIAAELAASPTALSLAWLMHQPAVSTVIVGATKPAQLQESIQS 287 + K+R + D + IA SP ++LAWL+ +P V++VIVGA + +QL+++I + Sbjct: 245 P-IVDKERAWNVIDVLKPIAKAHGCSPARIALAWLLAKPVVTSVIVGAKRLSQLEDNIAA 303 Query: 288 AALALDTGILHRLDEAS 304 L + RLD S Sbjct: 304 VGTVLSDDEVARLDAVS 320 >AGl2992_1 [M] COG1596 Periplasmic protein involved in polysaccharide export Length = 353 Score = 205 bits (521), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 121/317 (38%), Positives = 182/317 (57%), Gaps = 15/317 (4%) Query: 1 LGSSGLQVSALGLGTNAFGK---------RADQQTSIDIVHAALGQGINFIDTANIYAGS 51 LG++GL VS L LGT F Q + ++V A++ GINF DTA++Y+ Sbjct: 6 LGNTGLLVSQLCLGTMTFSDGTGIYEHIGDVGQTGADELVKASIDAGINFFDTADVYSAG 65 Query: 52 ESERIIGLALEG---RRQEAVLATKAXXXXXXXXXXXXXXXXXXXQELEGSLRRLKTDYV 108 SER +G + + R E VLATK +E SL+RL+TD++ Sbjct: 66 ASERTLGQSFKNLGIARNEIVLATKVYSRMGSGRNDVGASRGHIMDAVEASLKRLQTDHI 125 Query: 109 DLYQIHTFDPYTPLEETLRTLDDMVSAGKVRYIGASNYAAWELMKALGISELRNLVKYVS 168 DLYQIH D TP+EETLR LDD+V GKVRY+G SN+ AW + ALG+S L ++ + Sbjct: 126 DLYQIHATDTLTPVEETLRALDDLVRQGKVRYVGVSNWQAWRIATALGVSARLGLERFNT 185 Query: 169 IQCSYSLADRTPETQLLPLCLDQGIGIIPYFPLAGGILTGKYGGSDAPPAGSRAQTDPNF 228 +Q YS+A R E +L PL + +G++ + PLAGG+L+G++ ++ P GSR ++ +F Sbjct: 186 LQAYYSIAGRDLERELKPLLDAEKMGLLVWSPLAGGLLSGRFSRANQSPEGSR-RSSFDF 244 Query: 229 SRFLSKDR-IALGDAVGGIAAELAASPTALSLAWLMHQPAVSTVIVGATKPAQLQESIQS 287 + K+R + D + IA SP ++LAWL+ +P V++VIVGA + +QL+++I + Sbjct: 245 P-IVDKERAWNVIDVLKPIAKAHGCSPARIALAWLLAKPVVTSVIVGAKRLSQLEDNIAA 303 Query: 288 AALALDTGILHRLDEAS 304 L + RLD S Sbjct: 304 VGTVLSDDEVARLDAVS 320 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,313,933 Number of extensions: 910200 Number of successful extensions: 27594 Number of sequences better than 1.0e-05: 6329 Number of HSP's gapped: 8796 Number of HSP's successfully gapped: 6333 Length of query: 319 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 213 Effective length of database: 26,153,027 Effective search space: 5570594751 Effective search space used: 5570594751 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)