BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0407.0002.p
         (274 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DR1085 [QR] COG0500 SAM-dependent methyltransferases                   75   1e-13
TVN0247 [QR] COG0500 SAM-dependent methyltransferases                  69   1e-11
PA0558 [QR] COG0500 SAM-dependent methyltransferases                   59   7e-09
STM0259 [QR] COG0500 SAM-dependent methyltransferases                  56   8e-08
Z0233 [QR] COG0500 SAM-dependent methyltransferases                    55   2e-07

>DR1085 [QR] COG0500 SAM-dependent methyltransferases
          Length = 251

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 70/161 (43%), Gaps = 9/161 (5%)

Query: 10  NIERFLGFQDEYDRYRPEAPPIVVELLTQYLGRRPSL---VADVGCGTGLSTFLWKDAAD 66
           N +RFLG  + Y   RP+ PP     L   L RR  L   VAD+G GTGL T L      
Sbjct: 4   NPDRFLGRAEVYAAARPDYPPA----LGNELARRGLLRGQVADLGAGTGLFTRLLLQRGA 59

Query: 67  TVTGVEPNPDMXXXXXXXXXXXXXXXXXXXFIQGFSNQLPFSPDSVDIITCSQSFHWMDP 126
            V  VEPNP+M                      G +        SVD++T +Q+ HW DP
Sbjct: 60  QVIAVEPNPEMREQLLRALAAEVTRGQLR-VQSGTAEATGLPGSSVDLLTAAQAAHWFDP 118

Query: 127 DSTLQEVSRCLRPGGIFAAYDCDWPLVLQPDIEARYNHLIA 167
             T +E  R LRPGG       DW     P  EA Y  ++A
Sbjct: 119 APTRREFQRVLRPGGQVLFVWNDWREADGPFNEA-YGAVVA 158


>TVN0247 [QR] COG0500 SAM-dependent methyltransferases
          Length = 252

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 5/125 (4%)

Query: 14  FLGFQDEYDRYRPEAPPIVVELLTQYLG-RRPSLVADVGCGTGLSTFLWKDAADTVTGVE 72
           F G  + Y ++RP  P  +V++LT   G ++  ++AD+GCGTG+   ++ +  + V  ++
Sbjct: 8   FTGRSENYSKFRPSYPVGIVKMLTDKYGLKKEMVIADIGCGTGILARMFLENGNKVYCID 67

Query: 73  PNPDMXXXXXXXXXXXXXXXXXXXFIQGFSNQLPFSPDSVDIITCSQSFHWMDPDSTLQE 132
           PN +M                    ++G +        SV++I+  QSFHW D D    E
Sbjct: 68  PNGEM----LKFAKDELSSFGNAIIVRGSAENTGLEDHSVNVISAGQSFHWFDTDKAKVE 123

Query: 133 VSRCL 137
             R L
Sbjct: 124 FRRIL 128


>PA0558 [QR] COG0500 SAM-dependent methyltransferases
          Length = 255

 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 53/130 (40%), Gaps = 11/130 (8%)

Query: 16  GFQDEYDRY---RPEAPPIVVELLTQYLGRRPSLVA-DVGCGTGLSTFLWKDAADTVTGV 71
           GF  E  RY   RPE P  + + L   LG RP  VA D+G GTG  T L       V  V
Sbjct: 11  GFSAEAQRYAQGRPEYPEALSDWLRDALGLRPQTVAVDLGAGTGKFTRLLARTGARVVAV 70

Query: 72  EPNPDMXXXXXXXXXXXXXXXXXXXFIQGFSNQLPFSPDSVDIITCSQSFHWMDPDSTLQ 131
           EP   M                    + G +  +P +    D + C+Q+FHW      L+
Sbjct: 71  EPVDAMRAQLAEALPQVQA-------LAGSAQSIPLANGFADALVCAQAFHWFATVEALE 123

Query: 132 EVSRCLRPGG 141
           E+ R L   G
Sbjct: 124 EMRRVLTAEG 133


>STM0259 [QR] COG0500 SAM-dependent methyltransferases
          Length = 256

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 47  VADVGCGTGLSTFLWKDAADTVTGVEPNPDMXXXXXXXXXXXXXXXXXXXFIQGFSNQLP 106
           V D+GCG G ++F+    A++V   + +  M                     QG++ +LP
Sbjct: 48  VLDMGCGAGHASFVAAQHANSVVAYDLSASMLEVVAGAAEERHLSNIT--LRQGYAEKLP 105

Query: 107 FSPDSVDIITCSQS-FHWMDPDSTLQEVSRCLRPGGIFAAYDCDWP 151
           F   S +++    S  HW D    L+EV+R L+PGG+    D   P
Sbjct: 106 FEDASFEVVISRYSAHHWHDVGQALREVNRVLKPGGVLIIMDVMSP 151


>Z0233 [QR] COG0500 SAM-dependent methyltransferases
          Length = 256

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 4/142 (2%)

Query: 12  ERFLGFQDEYDRYRPEAPPIVVELLTQYLGRRP-SLVADVGCGTGLSTFLWKDAADTVTG 70
           ++F     EY      A    ++LL   L   P + V D+GCG G ++F+      TV  
Sbjct: 12  KQFSSQASEYLTSTVHASGRDLQLLAVCLADYPDASVLDMGCGAGHASFVAAQNVSTVVA 71

Query: 71  VEPNPDMXXXXXXXXXXXXXXXXXXXFIQGFSNQLPFSPDSVDIITCSQS-FHWMDPDST 129
            + +  M                     QG++  LPF+ ++ DI+    S  HW D  + 
Sbjct: 72  YDLSAQMLDVVAQAAEVRQLKNITTR--QGYAESLPFADNAFDIVISRYSAHHWHDVGAA 129

Query: 130 LQEVSRCLRPGGIFAAYDCDWP 151
           L+EV+R L+PGG     D   P
Sbjct: 130 LREVNRILKPGGRLIVMDVMSP 151


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 19,958,250
Number of extensions: 778683
Number of successful extensions: 3514
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3531
Number of HSP's successfully gapped: 8
Length of query: 274
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 169
Effective length of database: 26,268,361
Effective search space: 4439353009
Effective search space used: 4439353009
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)