BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0405.0009.p
         (157 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0615 [K] COG1846 Transcriptional regulators                         60   1e-09
Ta0411 [K] COG1846 Transcriptional regulators                          52   3e-07
CAC0876 [K] COG1846 Transcriptional regulators                         50   1e-06
SP0416 [K] COG1846 Transcriptional regulators                          49   4e-06
SPy1755 [K] COG1846 Transcriptional regulators                         48   5e-06

>lin0615 [K] COG1846 Transcriptional regulators
          Length = 153

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 1/135 (0%)

Query: 13  ALIEAFQQFSRLNWRRNSISSLKPSELRMLVSIRQGNEREGRKGQTVSDLSKQLKVTSPT 72
           ++I+AF  F     +   I     SE R +  + +G +  G K + VSDL   L+++ P+
Sbjct: 11  SVIKAFMNFKHAEIKSFQIPGYSKSETRFIFILSRGLKSRGPKIR-VSDLGHMLRISKPS 69

Query: 73  VTQMVNSLISQGYAIRTTDAQDRRISEITLTDRGERLAELVTVRTHETFKGMIDYLGKEP 132
           VTQM+ SL  +G   R  + +D+R   + LT+ G  +++ +      +F+ M ++LG++ 
Sbjct: 70  VTQMIQSLEGKGLIKRVQNPEDKRSMYVELTEVGAGVSKKMFDEFQASFEDMQEFLGEDD 129

Query: 133 SDTLRQLLNGVYEYF 147
              L  LL  + +Y 
Sbjct: 130 MKKLITLLEKLTDYL 144


>Ta0411 [K] COG1846 Transcriptional regulators
          Length = 153

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 15/111 (13%)

Query: 9   ENIDALIEAFQQFSR---LNWRRNS----ISSLKPSELRMLVSIRQGNEREGRKGQTVSD 61
           E+ DAL+E +  F++   L  RR      I+ LKP E+R+L  + + N         V+ 
Sbjct: 4   EDCDALMEIWHHFAKVYVLGKRRMEDSLQITQLKPIEVRILYYLSEEN-------FNVNR 56

Query: 62  LSKQLKVTSPTVTQMVNSLISQGYAIRTTDAQDRRISEITLTDRG-ERLAE 111
           L++   VT   +T +++ L ++GY +R+ +A DRR+  + +TD+G E LAE
Sbjct: 57  LAEMNFVTPAWITGVLDDLENRGYIVRSRNASDRRVVNVEITDKGREILAE 107


>CAC0876 [K] COG1846 Transcriptional regulators
          Length = 151

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 50/108 (46%)

Query: 44  SIRQGNEREGRKGQTVSDLSKQLKVTSPTVTQMVNSLISQGYAIRTTDAQDRRISEITLT 103
           SIR        K  T++DL K L    P VT  V+ L+    A R  D  DRRI  I+LT
Sbjct: 41  SIRVLFALNNHKKITITDLGKVLCAHKPNVTSWVDCLVKNDLACRLYDDNDRRIIYISLT 100

Query: 104 DRGERLAELVTVRTHETFKGMIDYLGKEPSDTLRQLLNGVYEYFEQLN 151
           + G+   +      +++F   + +L  E  + L Q LN +     ++N
Sbjct: 101 ENGKLTIDKCKEVLNKSFAERLAHLNDEDLELLIQTLNNMSMLLNKIN 148


>SP0416 [K] COG1846 Transcriptional regulators
          Length = 144

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 58  TVSDLSKQLKVTSPTVTQMVNSLISQGYAIRTTDAQDRRISEITLTDRGERLAELVTVRT 117
           T S +SK+L VT  TVT  +N+L  +GY  R    QDRR+  + LT +G RL   +  R 
Sbjct: 51  TPSQVSKELMVTLGTVTTSLNNLERKGYIERVRSEQDRRVVHLHLTKKG-RLIHRLHKRF 109

Query: 118 HETF-KGMIDYLGKEPSDTLRQLLNGVYEYFEQL 150
           H+   + +ID + +E    + + L  +Y++ E L
Sbjct: 110 HKAMVEKIIDGMSEEEIAVMGKGLTNLYQFLEDL 143


>SPy1755 [K] COG1846 Transcriptional regulators
          Length = 144

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 58  TVSDLSKQLKVTSPTVTQMVNSLISQGYAIRTTDAQDRRISEITLTDRGERLAELVTVRT 117
           T SD++++L VT  TVT  +N L ++GY  RT    DRR+  ++LT RG RL + +  + 
Sbjct: 51  TPSDIARELMVTLGTVTTSLNKLEAKGYIARTRSRSDRRVVYLSLTKRG-RLLDRLHAKF 109

Query: 118 HETFKG-MIDYLGKEPSDTLRQLLNGVYEYFEQL 150
           H+   G +I  +  E    L + L  ++++ E L
Sbjct: 110 HKNMVGHVIADMSDEEMQALVRGLGNLHQFLEDL 143


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.131    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,197,579
Number of extensions: 318812
Number of successful extensions: 1316
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1322
Number of HSP's successfully gapped: 8
Length of query: 157
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 59
Effective length of database: 27,075,699
Effective search space: 1597466241
Effective search space used: 1597466241
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)