BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0405.0008.p
         (144 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cgl1040 [K] COG1846 Transcriptional regulators                         65   3e-11
MTH313 [K] COG1846 Transcriptional regulators                          50   2e-06
STM1547 [K] COG1846 Transcriptional regulators                         49   3e-06

>Cgl1040 [K] COG1846 Transcriptional regulators
          Length = 158

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 9/145 (6%)

Query: 4   TVDVIELEMAILVRRLVSMT-TYKKIGNLDRSAYLLLYQIDSHGSAGVKALSDEFHLDIS 62
           T+D +  E+ +L R  V  T T K+   +DRSA +LL ++D+ G   V  L++ F L++S
Sbjct: 13  TLDQLAYEIILLTRYGVQNTPTNKREAIMDRSALILLTRLDAQGPMTVNELAESFGLNVS 72

Query: 63  TVSRQAAALEQKGYVRRIPDPVDGRAYSLEM---TEAGLEVLNENKKARQDSIGKMLSSW 119
           TV RQ  A    G +    + VD +A   ++   TE G E L +   ARQ  + ++L  W
Sbjct: 73  TVHRQLKAAIANGLI----EVVDDQACPAKLHRPTELGKEKLQQELLARQQDLTRILHDW 128

Query: 120 SDGERVIFGELLRKFNMAILEEALE 144
            + +     +LLRK N + LEE L+
Sbjct: 129 DEEDIKTHAKLLRKHNES-LEEYLD 152


>MTH313 [K] COG1846 Transcriptional regulators
          Length = 254

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 8/111 (7%), Positives = 19/111 (17%), Gaps = 2/111 (1%)

Query: 26  KKIGNLDRSAYLLLYQIDSHGSAGVKA--LSDEFHLDISTVSRQAAALEQKGYVRRIPDP 83
           ++         +L  Q       G                    A     K   R    P
Sbjct: 24  EEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSYGAGRGVAMVPRIKNGSRAAFVP 83

Query: 84  VDGRAYSLEMTEAGLEVLNENKKARQDSIGKMLSSWSDGERVIFGELLRKF 134
                                 +  +    +   + +  + ++     R  
Sbjct: 84  QAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLVEARGHRIE 134


>STM1547 [K] COG1846 Transcriptional regulators
          Length = 162

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 54/113 (47%)

Query: 30  NLDRSAYLLLYQIDSHGSAGVKALSDEFHLDISTVSRQAAALEQKGYVRRIPDPVDGRAY 89
            LDR+ + +L  I+  G  GV  L++    D +TVSRQ A LE+ G + R  + +D R  
Sbjct: 46  QLDRALFSILISIERLGPIGVVELAERAGRDYTTVSRQVAKLEKLGLIIRQHNAIDRRIR 105

Query: 90  SLEMTEAGLEVLNENKKARQDSIGKMLSSWSDGERVIFGELLRKFNMAILEEA 142
              ++  G  +      AR+     +   W   E  +F  L++KF  A+  +A
Sbjct: 106 EAVISRTGKAMTERIDAAREQMGNVVFKDWPQDELDVFVRLMQKFADAMDSDA 158


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.133    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,944,096
Number of extensions: 355787
Number of successful extensions: 894
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 899
Number of HSP's successfully gapped: 3
Length of query: 144
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 48
Effective length of database: 27,306,367
Effective search space: 1310705616
Effective search space used: 1310705616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)