BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0405.0005.p
         (200 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1002 [K] COG1309 Transcriptional regulator                           80   2e-15
lin1827 [K] COG1309 Transcriptional regulator                          73   2e-13
XF2085 [K] COG1309 Transcriptional regulator                           53   3e-07

>BH1002 [K] COG1309 Transcriptional regulator
          Length = 201

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 4/195 (2%)

Query: 1   MNGFEKRAALIKSKIMKTTMELLKTWEIKKLRIADIAKAAGVSQVTIYNYFGSKEALISE 60
           M+GF++R    K  I++  + L   + ++K+ IA+IAK A VSQVTIYNYF SK  L  E
Sbjct: 1   MDGFQRRKEQKKRDILEAALSLFMEYGLQKVSIAEIAKNANVSQVTIYNYFESKHNLTHE 60

Query: 61  SFKDFVXXXXXXXXXXMRQQKTLKERITYFIFKDKETYSTLDPALVKEIMFDDEAMYQYI 120
            F  ++          +   K   E+I   +F+ KE    +     + +M +  A     
Sbjct: 61  VFLYYMDKAVRDFEQTVYSDKPFPEKIKEIMFRKKEVARRIHEEFYQYLMKEYTANETIA 120

Query: 121 QQQYDDRVMPLMVQMVEEGKASGEISQKVSMEAVLVMIQMYIKSSGEMLDSVAKHEDKNQ 180
           +  Y    +     + +EGK  G +   +S EA++     YIK   E +     +E    
Sbjct: 121 ENDYMQNALQHFDHLFQEGKEQGYVDPSLSHEAII----FYIKMLNEYIQKEEVYEKILP 176

Query: 181 FLDELFHIFFYGLCG 195
             +++  +FFYG+ G
Sbjct: 177 LTEDITKLFFYGIMG 191


>lin1827 [K] COG1309 Transcriptional regulator
          Length = 191

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 13/200 (6%)

Query: 1   MNGFEKRAALIKSKIMKTTMELLKTWEIKKLRIADIAKAAGVSQVTIYNYFGSKEALISE 60
           MN +EKR    K+ I    + L       ++ I DIA  AGVSQV+IYNYFG+KEAL++E
Sbjct: 1   MNNYEKRTLKKKTAITHAALTLFGKAGFSEVSIKDIASLAGVSQVSIYNYFGNKEALVAE 60

Query: 61  SFKDFVXXXXXXXXXXMRQQKTLKERITYFIFKDKETYSTLDPALVKEIMFDDEAMYQYI 120
             K  +          +  + T  E++T  I   +  ++ ++ +L K I  +     Q+I
Sbjct: 61  CAKVIMQDTISLAEEILVSEGTFTEKLTRAI---QLCHAEINVSLSKFISTEASKDSQFI 117

Query: 121 Q---QQYDDRVMPLMVQMVEEGKASGEISQKVSMEAVLVMIQMYIKSSGEMLDSVAKHE- 176
                  +     + ++ V  GK +  I+  +S +    +IQ++I S   +  ++ + E 
Sbjct: 118 TLLVNNINKLKNDIYMEYVAAGKKAKVINNDISDD----VIQLFIDSINGLGLTIPEEEL 173

Query: 177 DKNQFLDELFHIFFYGLCGR 196
           +K Q   E+ H+F YGL G+
Sbjct: 174 EKKQ--AEIIHLFLYGLIGK 191


>XF2085 [K] COG1309 Transcriptional regulator
          Length = 205

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 20/164 (12%)

Query: 11  IKSKIMKTTMELLKTWEIKKLRIADIAKAAGVSQVTIYNYFGSKEA-----------LIS 59
           ++ +I+K   E    +  +K  ++D+AKA G S+  IY +F SK+A           +I 
Sbjct: 19  VRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVICSNRLSIII 78

Query: 60  ESFKDFVXXXXXXXXXXMRQQKTLKERITYFIFKDKETYSTLDPALVKEIMFDDEAMYQY 119
            S  + V           R  KTL E   Y  F D++ Y     ++ +   +    +Y+ 
Sbjct: 79  TSVDEAVANASTPPEQLRRMFKTLVEAGNYLFFHDRKLYDIAATSISES--WPSVGVYE- 135

Query: 120 IQQQYDDRVMPLMVQMVEEGKASGEISQKVSMEAVLVMIQMYIK 163
                 D +  L++Q+V +G+ SGE  +K  ++  L  I + ++
Sbjct: 136 ------DHLKALVLQIVRDGRESGEFERKTPLDETLNAIYLVMR 173


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.134    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,929,198
Number of extensions: 381058
Number of successful extensions: 1134
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1132
Number of HSP's successfully gapped: 6
Length of query: 200
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 99
Effective length of database: 26,729,697
Effective search space: 2646240003
Effective search space used: 2646240003
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)