BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0045.p (137 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1358 [S] COG3865 Uncharacterized protein conserved in bacteria 155 1e-38 lin1207 [S] COG2764 Uncharacterized protein conserved in bacteria 89 2e-18 RSp0601 [S] COG2764 Uncharacterized protein conserved in bacteria 80 1e-15 lin0813 [S] COG2764 Uncharacterized protein conserved in bacteria 70 7e-13 CAC3689 [S] COG2764 Uncharacterized protein conserved in bacteria 70 7e-13 >PA1358 [S] COG3865 Uncharacterized protein conserved in bacteria Length = 132 Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 71/127 (55%), Positives = 93/127 (73%), Gaps = 1/127 (0%) Query: 8 ISTFLMFEG-QAEEAMNFYVSLFDRSEVTSIKRYGPGEAGAEGTVMHASFTIKGASFMCI 66 + FLMF+G QAE AMNFY+SLFD +E+ I+RYG G EG+V+ A F + S CI Sbjct: 5 VRPFLMFQGVQAEAAMNFYLSLFDDAEILQIQRYGAEGPGPEGSVLKALFRLGDQSVHCI 64 Query: 67 DSHVKHGFSFTPSISLYVNCTSEAELDTVFEQLSQGGNVLMPLGEYPFSRKFGWVADRFG 126 DSHV+H F FTP+ S +V+C S A+++ + E LS GG LMPLG+Y FS++F W+ADRFG Sbjct: 65 DSHVRHAFDFTPAFSFFVDCESNAQIERLAEALSDGGKALMPLGDYGFSQRFAWLADRFG 124 Query: 127 VTWQLNL 133 V+WQLNL Sbjct: 125 VSWQLNL 131 >lin1207 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 135 Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 8/133 (6%) Query: 8 ISTFLMFEGQAEEAMNFYVSLFDRSEVTSIKRYG-------PGEAGAEGTVMHASFTIKG 60 ++ +L F Q+ +A+ FY +F ++ T + YG P E + VM+AS + G Sbjct: 3 LNVYLNFRTQSRDAIAFYEEIFG-TKCTDLMTYGEIESAEEPIEDSLKDLVMNASLVLDG 61 Query: 61 ASFMCIDSHVKHGFSFTPSISLYVNCTSEAELDTVFEQLSQGGNVLMPLGEYPFSRKFGW 120 M D +F +I+L ++ T E +L F QL++GGN++MPLG+ +S K+G Sbjct: 62 VKVMFSDVPKSMPLTFGDNITLVIDTTDEIKLTKQFHQLAEGGNIIMPLGKTFWSEKYGQ 121 Query: 121 VADRFGVTWQLNL 133 V D+FG+ WQLNL Sbjct: 122 VTDKFGIGWQLNL 134 >RSp0601 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 143 Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 8 ISTFLMFEGQAEEAMNFYVSLFDRSEVTSIKRYGPGEAGAE-------------GTVMHA 54 + +L FEG+ EEA+ FY ++V + RY GAE VMHA Sbjct: 3 VQPYLFFEGRCEEALEFYKKTLG-AKVDMLMRYKDAPPGAEPKAEQCGGVVPPGDKVMHA 61 Query: 55 SFTIKGASFMCIDSHVKHGFSFTPSISLYVNCTSEAELDTVFEQLSQGGNVLMPLGEYPF 114 +F I M D F SL V+ EA+ + F+ L GG V MPL E F Sbjct: 62 AFRIGDTLVMASDGMASGKAEFK-GFSLSVDVADEADAERTFKALGDGGQVSMPLAETFF 120 Query: 115 SRKFGWVADRFGVTWQLNLPDP 136 +++FG + DRFGV W + P P Sbjct: 121 AKRFGMLVDRFGVMWMVIAPKP 142 >lin0813 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 137 Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 6 PGISTFLMFEGQAEEAMNFYVSLFDRSEVTSIKRYGP-----GEAGAEGTVMHASFTIKG 60 P +L+F G+ ++A+ FY +F ++E+TS++R+ G+A +MH+ G Sbjct: 2 PFTVPYLVFNGEGQDALTFYADVF-QAEITSVQRFKEMNNFDGDAVFGERLMHSRLAKNG 60 Query: 61 ASFMCIDSHVKHGFSFTPSISLYVNCTSEAELDTVFEQLSQGGNVLMPLGEYPFSRKFGW 120 F+ I GF+ +++ +N +E ++ +E LS G V M L + + Sbjct: 61 EEFIYITDAPYDGFTIGNRVTILINFETEDDIKYAYEVLSATGKVEMELQVAFWGSTYAQ 120 Query: 121 VADRFGVTWQLNL 133 V DRFGV WQLN Sbjct: 121 VTDRFGVFWQLNF 133 >CAC3689 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 137 Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 9/133 (6%) Query: 7 GISTFLMFEGQAEEAMNFYVSLFDRSEVTSIKRYG--PGEAGAE------GTVMHASFTI 58 I ++ F+G EA+ FY +F+ + I YG P + GA+ V++A+ + Sbjct: 2 AIQAYINFDGNCREAVEFYAEVFETKK-PKIMVYGDMPPKEGAKFNEETKNLVLNAALEV 60 Query: 59 KGASFMCIDSHVKHGFSFTPSISLYVNCTSEAELDTVFEQLSQGGNVLMPLGEYPFSRKF 118 KG++ M D +ISL V EL +F +L + G VLM L E +S+ + Sbjct: 61 KGSTIMFSDIVPGMKLVVGNNISLVVIINDIDELKLIFNRLKEKGTVLMELQETFWSKCY 120 Query: 119 GWVADRFGVTWQL 131 G+V D+FG+ WQL Sbjct: 121 GYVVDKFGIEWQL 133 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.135 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 10,489,835 Number of extensions: 374270 Number of successful extensions: 609 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 604 Number of HSP's successfully gapped: 14 Length of query: 137 Length of database: 38,378,431 Length adjustment: 95 Effective length of query: 42 Effective length of database: 27,421,701 Effective search space: 1151711442 Effective search space used: 1151711442 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 110 (47.0 bits)