BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0043.p (302 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO0524 [R] COG4533 ABC-type uncharacterized transport system, p... 112 1e-24 VCA0578 [R] COG4533 ABC-type uncharacterized transport system, p... 106 4e-23 ZyabN [R] COG4533 ABC-type uncharacterized transport system, per... 97 4e-20 ECs0074 [R] COG4533 ABC-type uncharacterized transport system, p... 97 4e-20 yabN [R] COG4533 ABC-type uncharacterized transport system, peri... 97 4e-20 >YPO0524 [R] COG4533 ABC-type uncharacterized transport system, periplasmic component Length = 553 Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/198 (35%), Positives = 103/198 (52%), Gaps = 12/198 (6%) Query: 12 GLDTLRIIRNRRMEKLDPATVYRAFESYLIEQICSTLVIYDAKNNSFLPGLAHMWEA-NP 70 G LR++ R +E L P T R E++++ QI + L + +N P L+H W+A P Sbjct: 118 GKHILRVLYYRPLENLLPGTALRRSETHMVRQIFNGLTRINEENGELEPDLSHHWQAITP 177 Query: 71 EHTSYIFYLRKRVRFHHGRFLTSKDVKETLLRLTDRQSPVSWHYRDIVSVELQGDHRIRI 130 H + FYLR + FHHGR L DV +L RL + P+ + I V + I + Sbjct: 178 LH--WRFYLRPAIHFHHGRELEMSDVISSLTRLIPQ--PL---FSHIAEVRSPTPYVIDV 230 Query: 131 DLARPNLFFLHLFSCVHMSIVPYDV----DFLHQPIGTGPYRLLDYNEKVLVLAAFDDYY 186 L P+ + L VH I+P + DF QPIGTGPY ++ + L + AFD+Y+ Sbjct: 231 YLHSPDHWLPWLLGSVHAMILPQEWETQPDFHRQPIGTGPYSVIRNHHSQLKIQAFDNYF 290 Query: 187 AIRPLLDRVEIWYVPELG 204 R L+D V IW +PEL Sbjct: 291 GFRALIDEVNIWVLPELS 308 >VCA0578 [R] COG4533 ABC-type uncharacterized transport system, periplasmic component Length = 565 Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 120/252 (47%), Gaps = 36/252 (14%) Query: 12 GLDTLRIIRNRRMEKLDPATVYRAFESYLIEQICSTLVIYDAKNNSFLPGLAHMWEANPE 71 GL +R+ R++ L+P R E ++ Q+ S L D + P LAH W+A + Sbjct: 119 GLQVVRLPYYRQLSMLNPQKPMRRSEQHIARQVFSGLTRLD-EEEQLQPDLAHAWQALSD 177 Query: 72 HTSYIFYLRKRVRFHHGRFLTSKDVKETLLRL--------TDR-QSPVSWHYRDIVSVEL 122 T + FYLR VRFH+G LT++ + + L +L DR SP W V V L Sbjct: 178 -THWRFYLRPGVRFHNGNLLTTELIVQNLWQLRLLNLFAHIDRVDSPYPW----AVDVHL 232 Query: 123 QGDHRIRIDLARPNLFFLHLFSCVHMSIVPYDVD----FLHQPIGTGPYRLLDYNEKVLV 178 Q +P+ L + I+P + D F P+GTGPY+++ +EK LV Sbjct: 233 Q----------KPDTRLPLLLAEACAKILPAESDRNPDFDLMPVGTGPYKVVLNDEKRLV 282 Query: 179 LAAFDDYYAIRPLLDRVEIWYVPELGYNDRTYQLPDXXXXXXXXXXXXCANLSIDYPALG 238 L AFD Y+ RPLLDRVE+W + E+ + P + +D G Sbjct: 283 LQAFDGYFGFRPLLDRVEVWVIDEV---HSSMVFPSLSNPMKTARGSSTEEVELDP---G 336 Query: 239 CRYIMMNFRRNG 250 C Y+++N RRNG Sbjct: 337 CTYLLLN-RRNG 347 >ZyabN [R] COG4533 ABC-type uncharacterized transport system, periplasmic component Length = 551 Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 12/198 (6%) Query: 12 GLDTLRIIRNRRMEKLDPATVYRAFESYLIEQICSTLVIYDAKNNSFLPGLAHMWEA-NP 70 G LR++ R + L P + R E+++ QI S+L + +N +AH W+ +P Sbjct: 118 GRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISP 177 Query: 71 EHTSYIFYLRKRVRFHHGRFLTSKDVKETLLRLTDRQSPVSWHYRDIVSVELQGDHRIRI 130 H + F+LR V FHHGR L DV +L R+ P+ H DIVS + I Sbjct: 178 LH--WRFFLRPGVHFHHGRELEMDDVIASLKRINTL--PLYSHIADIVS---PTPWTLDI 230 Query: 131 DLARPNLFFLHLFSCVHMSIVPYD----VDFLHQPIGTGPYRLLDYNEKVLVLAAFDDYY 186 L +P+ + L V I+P + +F PIGTGPY ++ + L + AFDD++ Sbjct: 231 HLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFF 290 Query: 187 AIRPLLDRVEIWYVPELG 204 R L+D V +W +PE+ Sbjct: 291 GYRALIDEVNVWVLPEIA 308 >ECs0074 [R] COG4533 ABC-type uncharacterized transport system, periplasmic component Length = 552 Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 12/198 (6%) Query: 12 GLDTLRIIRNRRMEKLDPATVYRAFESYLIEQICSTLVIYDAKNNSFLPGLAHMWEA-NP 70 G LR++ R + L P + R E+++ QI S+L + +N +AH W+ +P Sbjct: 118 GRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISP 177 Query: 71 EHTSYIFYLRKRVRFHHGRFLTSKDVKETLLRLTDRQSPVSWHYRDIVSVELQGDHRIRI 130 H + F+LR V FHHGR L DV +L R+ P+ H DIVS + I Sbjct: 178 LH--WRFFLRPGVHFHHGRELEMDDVIASLKRINTL--PLYSHIADIVS---PTPWTLDI 230 Query: 131 DLARPNLFFLHLFSCVHMSIVPYD----VDFLHQPIGTGPYRLLDYNEKVLVLAAFDDYY 186 L +P+ + L V I+P + +F PIGTGPY ++ + L + AFDD++ Sbjct: 231 HLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFF 290 Query: 187 AIRPLLDRVEIWYVPELG 204 R L+D V +W +PE+ Sbjct: 291 GYRALIDEVNVWVLPEIA 308 >yabN [R] COG4533 ABC-type uncharacterized transport system, periplasmic component Length = 551 Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 12/198 (6%) Query: 12 GLDTLRIIRNRRMEKLDPATVYRAFESYLIEQICSTLVIYDAKNNSFLPGLAHMWEA-NP 70 G LR++ R + L P + R E+++ QI S+L + +N +AH W+ +P Sbjct: 118 GRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISP 177 Query: 71 EHTSYIFYLRKRVRFHHGRFLTSKDVKETLLRLTDRQSPVSWHYRDIVSVELQGDHRIRI 130 H + F+LR V FHHGR L DV +L R+ P+ H DIVS + I Sbjct: 178 LH--WRFFLRPGVHFHHGRELEMDDVIASLKRINTL--PLYSHIADIVSPT---PWTLDI 230 Query: 131 DLARPNLFFLHLFSCVHMSIVPYD----VDFLHQPIGTGPYRLLDYNEKVLVLAAFDDYY 186 L +P+ + L V I+P + +F PIGTGPY ++ + L + AFDD++ Sbjct: 231 HLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFF 290 Query: 187 AIRPLLDRVEIWYVPELG 204 R L+D V +W +PE+ Sbjct: 291 GYRALIDEVNVWVLPEIA 308 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.143 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,080,491 Number of extensions: 924368 Number of successful extensions: 13137 Number of sequences better than 1.0e-05: 73 Number of HSP's gapped: 13105 Number of HSP's successfully gapped: 73 Length of query: 302 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 196 Effective length of database: 26,153,027 Effective search space: 5125993292 Effective search space used: 5125993292 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)