BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0402.0034.p
         (76 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0564 [TK] COG0745 Response regulators consisting of a CheY-li...    87   8e-18
lin2516 [TK] COG0745 Response regulators consisting of a CheY-li...    78   4e-15
BH1153 [TK] COG0745 Response regulators consisting of a CheY-lik...    76   1e-14
BH0820 [TK] COG0745 Response regulators consisting of a CheY-lik...    73   1e-13
BS_ycbL [TK] COG0745 Response regulators consisting of a CheY-li...    70   6e-13

>CAC0564 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
          Length = 233

 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 56/76 (73%)

Query: 1   MTPKEYGILLLLARNKGRVFTSRDIYELVWEDTYLESDNTVLTHIRNLREKLGDTVKNSK 60
           +T +E+ IL+LL+RNKG VF++  IYE VW + + +  NTV+ HIR +REK+    +  +
Sbjct: 158 LTKREFDILVLLSRNKGVVFSTEKIYESVWHEEFYDCHNTVMVHIRKIREKIEKNPRKPE 217

Query: 61  YIRTVWGVGYKVDKEV 76
           YI+TVWGVGYK++K +
Sbjct: 218 YIKTVWGVGYKIEKNI 233


>lin2516 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
          Length = 231

 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 49/73 (67%)

Query: 1   MTPKEYGILLLLARNKGRVFTSRDIYELVWEDTYLESDNTVLTHIRNLREKLGDTVKNSK 60
           +T  E+ IL LLA   GRVF+S  I+E +W++  L +  TV+ HI NLR+KL D +    
Sbjct: 158 LTTSEFDILFLLASEPGRVFSSEYIFEKIWQEKALGASKTVMVHISNLRDKLRDAMGGEN 217

Query: 61  YIRTVWGVGYKVD 73
            I+T+WGVGYK++
Sbjct: 218 VIKTIWGVGYKIE 230


>BH1153 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
          Length = 232

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 1/75 (1%)

Query: 1   MTPKEYGILLLLARNKGRVFTSRDIYELVW-EDTYLESDNTVLTHIRNLREKLGDTVKNS 59
           +TP EY I+ LL  N GRVF+  +IYE VW E ++  S+NTV  HIR +REK+     N 
Sbjct: 158 LTPIEYRIIELLMTNAGRVFSIAEIYERVWNEPSFQSSENTVAVHIRKIREKIEIDPSNP 217

Query: 60  KYIRTVWGVGYKVDK 74
           ++++ VWG+GYK+++
Sbjct: 218 RHLKVVWGIGYKMER 232


>BH0820 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
          Length = 234

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 45/72 (62%)

Query: 1   MTPKEYGILLLLARNKGRVFTSRDIYELVWEDTYLESDNTVLTHIRNLREKLGDTVKNSK 60
           +T KE+ IL L   +  +VFT   +Y  VW D Y   +N +  HIR LREK+ DT    +
Sbjct: 159 LTAKEFQILKLFVTHPKKVFTKEQLYRSVWNDDYYSDENVINVHIRRLREKIEDTPSKPQ 218

Query: 61  YIRTVWGVGYKV 72
           YI+T+WG+GY++
Sbjct: 219 YIKTIWGIGYRM 230


>BS_ycbL [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
          Length = 215

 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 0/72 (0%), Positives = 0/72 (0%)

Query: 1   MTPKEYGILLLLARNKGRVFTSRDIYELVWEDTYLESDNTVLTHIRNLREKLGDTVKNSK 60
           +  K         R       S    +L+     +              E+L +     +
Sbjct: 152 VIFKGGVGRSDFPRGDHNQLISSIKDKLLPLGDDVIFIPGHGPLSTLGYERLHNPFLQDE 211

Query: 61  YIRTVWGVGYKV 72
                       
Sbjct: 212              223


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,812,260
Number of extensions: 185946
Number of successful extensions: 641
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 64
Length of query: 76
Length of database: 38,378,431
Length adjustment: 47
Effective length of query: 29
Effective length of database: 32,957,733
Effective search space: 955774257
Effective search space used: 955774257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)