BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0402.0024.p
         (102 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MJ0886_1 [H] COG0303 Molybdopterin biosynthesis enzyme                 55   2e-08
AF0931_1 [H] COG0303 Molybdopterin biosynthesis enzyme                 54   6e-08
mlr0617 [H] COG0303 Molybdopterin biosynthesis enzyme                  54   7e-08
PH0582 [H] COG0303 Molybdopterin biosynthesis enzyme                   53   1e-07
PAB1436 [H] COG0303 Molybdopterin biosynthesis enzyme                  52   3e-07

>MJ0886_1 [H] COG0303 Molybdopterin biosynthesis enzyme
          Length = 403

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 19 VAEAQSRIMEYAKLL--QMEKVPLDQSVGRYLAEPVYAPHPFPAFNRSGMDGYALMAADT 76
          + EA+S I E  K L  ++E+V L  ++GR LAE V++    P ++R+ MDGYA+ A DT
Sbjct: 10 IEEAKSIINESLKKLKNEVEEVDLFNAIGRVLAEDVFSNIDIPPYDRAKMDGYAVKAEDT 69

Query: 77 EEAGEGKRVWLDVVDNIXXXXLR 99
           EA E   V L V+ ++    ++
Sbjct: 70 YEADEDNPVELKVIGSLKAGEIK 92


>AF0931_1 [H] COG0303 Molybdopterin biosynthesis enzyme
          Length = 416

 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 11 KFHRKALQVAEAQSRIME-YAKLLQMEKVPLDQSVGRYLAEPVYAPHPFPAFNRSGMDGY 69
          K  R  + V EA+  +   ++   + E VPL  + GR LA+ VYA    P F+R+ MDGY
Sbjct: 3  KVFRDVVTVDEARGLLFNHFSPRRKTEVVPLHLAAGRVLAKDVYALTDVPPFDRATMDGY 62

Query: 70 ALMAADTEEAGEGKRVWLDVVDNI 93
          A+ A DT EA E   V L VV  +
Sbjct: 63 AVRAEDTFEAEEDSPVTLKVVGTV 86


>mlr0617 [H] COG0303 Molybdopterin biosynthesis enzyme
          Length = 401

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 37/58 (63%)

Query: 19 VAEAQSRIMEYAKLLQMEKVPLDQSVGRYLAEPVYAPHPFPAFNRSGMDGYALMAADT 76
          VAEA  R+++ A  L  E VPL ++V R LAEP+ A    P FN S MDGYA+ AAD 
Sbjct: 6  VAEALERLLDGAAPLAGESVPLFEAVDRVLAEPLAALRTQPPFNASAMDGYAVRAADV 63


>PH0582 [H] COG0303 Molybdopterin biosynthesis enzyme
          Length = 402

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 39/59 (66%)

Query: 35 MEKVPLDQSVGRYLAEPVYAPHPFPAFNRSGMDGYALMAADTEEAGEGKRVWLDVVDNI 93
          +E+VP+++ +GR  AE +Y+P   P F+R+ +DGYA+ A DT  A E   V L V+ ++
Sbjct: 25 IEEVPIEKGLGRIAAEDIYSPIDVPPFDRATVDGYAVRAEDTFMASEASPVRLKVIGSV 83


>PAB1436 [H] COG0303 Molybdopterin biosynthesis enzyme
          Length = 402

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 44/79 (55%)

Query: 15 KALQVAEAQSRIMEYAKLLQMEKVPLDQSVGRYLAEPVYAPHPFPAFNRSGMDGYALMAA 74
          K + +  A   +  +   L  E+V L +++GR +AE +Y+P   P F+R+ +DGYA+ A 
Sbjct: 5  KVVPLERALEIVNSFTLPLGTEEVKLSEALGRIVAEDIYSPIDIPPFDRATVDGYAVRAE 64

Query: 75 DTEEAGEGKRVWLDVVDNI 93
          DT  A E   + L VV  I
Sbjct: 65 DTFMASEANPIKLKVVGEI 83


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,957,225
Number of extensions: 265078
Number of successful extensions: 421
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 422
Number of HSP's successfully gapped: 16
Length of query: 102
Length of database: 38,378,431
Length adjustment: 70
Effective length of query: 32
Effective length of database: 30,305,051
Effective search space: 969761632
Effective search space used: 969761632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)