BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0016.p (208 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC2651 [HC] COG0543 2-polyprenylphenol hydroxylase and related ... 177 1e-44 aq_1305 [HC] COG0543 2-polyprenylphenol hydroxylase and related ... 93 2e-19 TVN1171 [HC] COG0543 2-polyprenylphenol hydroxylase and related ... 88 9e-18 Ta0403 [HC] COG0543 2-polyprenylphenol hydroxylase and related f... 79 5e-15 PAB1150 [HC] COG0543 2-polyprenylphenol hydroxylase and related ... 76 4e-14 >CAC2651 [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Length = 346 Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 11/218 (5%), Positives = 25/218 (11%), Gaps = 16/218 (7%) Query: 2 GQFYMLRAWGAFPLLSRPLSIHQVNDNGVEFLYHVVGEGTKILAELEPGDSLELEGPFGS 61 Q A G + + VG E Sbjct: 34 AQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSR 93 Query: 62 GFPV--VDGKVALVGGGIGIAPLYYCAQELPGS--DIYLGFSREAFRTEAFRPLAAELTV 117 + + R + Sbjct: 94 NNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAP 153 Query: 118 NV-------GGLVLDSVDFTSYDHIFVCGPHPMXXXXXXXXXXXXXXXKRPNVYLSLENR 170 V Y + + P + Sbjct: 154 AVSLLDTLDALAEYQRAGKIRYIGVSNETAFGV-----MRYLHLADKHDLPRIVTIQNPY 208 Query: 171 MACGIGACLVCSVSCRDGQRKACADGPVFLAEEVIFHD 208 + + + + A + + Sbjct: 209 SLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYL 246 >aq_1305 [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Length = 346 Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 7/222 (3%), Positives = 24/222 (10%), Gaps = 24/222 (10%) Query: 2 GQFYMLRAWGAF-PLLSRPLSIHQVNDNGVEFLYHVVGEGTKILAELEPGDSLELEGPFG 60 + + ++ + + + + Sbjct: 37 DYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNND 96 Query: 61 SGFPVVDG-KVALVGGGIGIAPLYYCAQELP--GSDIYLGF---SREAFRTEAF---RPL 111 G + + + L + + Sbjct: 97 KGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 Query: 112 AAELTVNVG-----GLVLDSVDFTSYDHIF-VCGPHPMXXXXXXXXXXXXXXXKRPNVYL 165 + + G + N Y Sbjct: 157 LLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQ-------NPYS 209 Query: 166 SLENRMACGIGACLVCSVSCRDGQ-RKACADGPVFLAEEVIF 206 L G+ Sbjct: 210 LLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKP 251 >TVN1171 [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Length = 346 Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 13/176 (7%), Positives = 30/176 (17%), Gaps = 17/176 (9%) Query: 38 GEGTKILAELEPGDSLELEGPFGSGFPVVDGKVALVGGGIGIAPLYYCAQELPGSDIYLG 97 T+ E + + G A +E + Sbjct: 62 QGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRL 121 Query: 98 FSREAFRTEAFRPLAAELTVNVGG--------LVLDSVDFTSYDHIFVCGPHPMXXXXXX 149 + + P G V + G Sbjct: 122 QTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRY-----I 176 Query: 150 XXXXXXXXXKRPNVYLSLENRMACGIGACLVCSVSCRDGQRKACADGPVFLAEEVI 205 ++L+ ++ + + S+ R E + Sbjct: 177 GVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSL----LNRSFEVGLAEVSQYEGV 228 >Ta0403 [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Length = 346 Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 13/175 (7%), Positives = 27/175 (15%), Gaps = 17/175 (9%) Query: 38 GEGTKILAELEPGDSLELEGPFGSGFPVVDGKVALVGGGIGIAPLYYCAQELPGSDIYLG 97 T+ E + + G A +E + Sbjct: 62 QGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRL 121 Query: 98 FSREAFRTEAFRPLAAELTVNVGG--------LVLDSVDFTSYDHIFVCGPHPMXXXXXX 149 + + P G V + G Sbjct: 122 QTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNE 181 Query: 150 XXXXXXXXXKRPNVYLSLENRMACGIGACLVCSVSCRDGQRKACADGPVFLAEEV 204 L+ ++ + + S+ R E Sbjct: 182 TAFGVMRYLH-----LADKHDLPRIVTIQNPYSL----LNRSFEVGLAEVSQYEG 227 >PAB1150 [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Length = 346 Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 13/215 (6%), Positives = 27/215 (12%), Gaps = 30/215 (13%) Query: 2 GQFYMLRAWGAFPLLSRPLSIHQVNDNGVEFLYHVVGEGTKILAELEPGDSLELEGPFGS 61 L L + + + Sbjct: 31 DAHAQLDYAV---AQGINLIDVAEM----YPVPPRPETQGLTETYVGNWLAKHGSREKLI 83 Query: 62 GFPVVDGKVALVGGGIGIAPLYYCAQELPGSD---IYLGFSREAFRTEAFRPLAAELTVN 118 V G GI L + Sbjct: 84 IASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGK 143 Query: 119 -------VGGLVLDSV--DFTSYDHIFVCGPHPMXXXXXXXXXXXXXXXKRPNVYLSLEN 169 V D + + ++L+ ++ Sbjct: 144 LGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVM-------RYLHLADKH 196 Query: 170 RMACGIGACLVCSVSCRDGQRKACADGPVFLAEEV 204 + + S+ R E Sbjct: 197 DLPRIVTIQNPYSL----LNRSFEVGLAEVSQYEG 227 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.144 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,091,889 Number of extensions: 651062 Number of successful extensions: 2241 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 2221 Number of HSP's successfully gapped: 13 Length of query: 208 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 106 Effective length of database: 26,614,363 Effective search space: 2821122478 Effective search space used: 2821122478 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 113 (48.1 bits)