BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0015.p (351 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2614 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzy... 274 2e-73 CAC3229 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzy... 264 2e-70 PA3723 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzym... 260 3e-69 BS_yqjM [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzy... 259 3e-69 all0827 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzy... 236 6e-62 >lin2614 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family Length = 346 Score = 274 bits (700), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 17/350 (4%), Positives = 45/350 (12%), Gaps = 15/350 (4%) Query: 3 MPDLFAPYELKALXXXXLKNRVVMPPMCQYAVDKQDGIPNDWHFVHYVSRAVGGTGFIIV 62 M P+ + M Q + + V + Sbjct: 1 MQYHRIPHSSLEVS---TLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPP 57 Query: 63 EMTGIHPDGRITNQDTGIWSDEHIAAYRRLTDAVHTQGARIAIQLGHAGRKAQDAEPPVA 122 + RK + Sbjct: 58 RPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDS 117 Query: 123 PSAIPFDANSKTPRELRTEEIAGLVEAYREGARRAVEAGFDTVELHGAHGYLIHQFHSPL 182 + D + A A + Sbjct: 118 LKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIG 177 Query: 183 TNVREDEYG---ADPVLFGEQVTRAVREVLPVEMPLLMRVSAKEYVEGGYNEDYALEFCR 239 + + + L Y L + Sbjct: 178 VSNETAFGVMRYLHLADKHDLPRIVTIQNP--YSLLNRSFEVGLAEVSQYEGVELLAYSC 235 Query: 240 RYKAAGVDMFHVXXXXXXXXXXXXXXXXXXAYQVALAEYIRSGLQVPVIAVGRLESYEEA 299 + + + + ++ IA + Sbjct: 236 LGFGTLTGKYLN----GAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQM 291 Query: 300 QSIVTGEKAELVAVGRGMLSDPYWALHAEEALGGIDKANVPKPYERGVWK 349 + + + G + + E + + Sbjct: 292 ALAFVRRQPFVASTLLGATTMDQLKTNIESLHL--ELSEDVLAEIEA-VH 338 >CAC3229 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family Length = 346 Score = 264 bits (674), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 21/345 (6%), Positives = 47/345 (13%), Gaps = 16/345 (4%) Query: 6 LFAPYELKALXXXXLKNRVVMPPMCQYAVDKQDGIPNDWHFVHYVSRAVGGTGFIIVEMT 65 + + + + V + V Sbjct: 3 YHRIPHSSLEV---STLGLGTMTFGEQNSEADAHA-QLDYAVAQGINLIDVAEMYPVPPR 58 Query: 66 GIHPDGRITNQDTGIWSDEHIAAYRRLTDAVHTQGARIAIQLGHAGRKAQDAE-PPVAPS 124 T + + ++ Sbjct: 59 PETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSL 118 Query: 125 AIPFDANSKTPRELRTEEIAGLVEAYREGARRAVEAGFDTVELHGAHGYLIHQFHSPLTN 184 + + + A L Y + Sbjct: 119 KRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGV 178 Query: 185 VREDEYGA---DPVLFGEQVTRAVREVLPVEMPLLMRVSAKEYVEG-GYNEDYALEFCRR 240 E +G + + R V P + V E A Sbjct: 179 SNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGF 238 Query: 241 YKAAGVDMFHVXXXXXXXXXXXXXXXXXXAYQVALAEYIRSGLQVPVIAVGRLESYEEAQ 300 + V + L+ + A Sbjct: 239 GTLT-GKYLNG----AKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMAL 293 Query: 301 SIVTGEKAELVAVGRGMLSDPYWALHAEEALGGIDKANVPKPYER 345 + V + + D + +V E Sbjct: 294 AFVRRQPFVASTLLGATTMDQLKTNIESL-HLELS-EDVLAEIEA 336 >PA3723 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family Length = 346 Score = 260 bits (664), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 19/348 (5%), Positives = 50/348 (14%), Gaps = 27/348 (7%) Query: 3 MPDLFAPYELKALXXXXLKNRVVMPPMCQYAVDKQDGIPNDWHFVHYVSRAVGGTGFIIV 62 M P+ + M Q + D + V + V Sbjct: 1 MQYHRIPHSSLEVS---TLGLGTMTFGEQNSE--ADAHAQLDYAVAQGINLIDVAEMYPV 55 Query: 63 EMTGIHPDGRITNQDTGIWSDEHIAAYRRLTDAVHTQGARIAIQLGHAGRKAQDAEP--- 119 T + + ++ Sbjct: 56 PPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALH 115 Query: 120 -------------PVAPSAIPFDANSKTPRELRTEEIAGLVEAYREGARRAVEAGFDTVE 166 T+ + A + Sbjct: 116 DSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRY 175 Query: 167 LHGAHGYLIHQFHSPLTNVREDEYGA---DPVLFGEQVTRAVREVLPVEMPLLMRVSAKE 223 + ++ + D + V + + ++ Sbjct: 176 IGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSC 235 Query: 224 YVEGGYNEDYALEFCRRYKAAGVDMFHVXXXXXXXXXXXXXXXXXXAYQVALAEYIRSGL 283 G Y + Sbjct: 236 LGFGTLTGKYLNGAKPAGARNTLFSRFT---RYSGEQTQKAVAAYVDIARRHGLDPAQMA 292 Query: 284 QVPVIAVGRLESYEEAQSIVTGEKAELVAVGRGMLSDPYWALHAEEAL 331 V + S + + K + ++ + D + A + Sbjct: 293 LAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEIEAVHQV 340 >BS_yqjM [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family Length = 346 Score = 259 bits (663), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 22/348 (6%), Positives = 58/348 (16%), Gaps = 22/348 (6%) Query: 6 LFAPYELKALXXXXLKNRVVMPPMCQYAVDKQDGIPNDWHFVHYVSRAVGGTGFIIVEMT 65 L+ L + D + + T Sbjct: 5 RIPHSSLEVST---LGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPET 61 Query: 66 GIHPDGRITNQDTGIWSDEHIAAYRRLTDAVHTQGARIAIQLGHAGRKAQDAEPPVAPSA 125 + + N S E + +++ I + ++A Sbjct: 62 QGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRL 121 Query: 126 IPFDANSKTPRELRTEEIAGLVEAYREGARRAVEAGFDTVELHGAHGYLIHQFHSPLTNV 185 + + Y + DT++ + + ++N Sbjct: 122 QTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNE 181 Query: 186 REDEYGADPVLFGEQVTRAVREVLPV-----EMPLLMRVSAKEYVEGGYNEDYALEFCRR 240 + + + V + C Sbjct: 182 TAFGVMRYL----HLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLG 237 Query: 241 YKAAGVDMFHVXXXXXXXXXXXXXXXXXXAYQVALAEYIRSGLQVPVIAVGRLESYEEAQ 300 + + V + L+ + A Sbjct: 238 FGTLTGKYLNG----AKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMAL 293 Query: 301 SIVTGEKAELVAVGRGMLSDPYWALHAEEALGGIDKANVPKP--YERG 346 + V + + D L + + E Sbjct: 294 AFVRRQPFVASTLLGATTMDQLKTNIESLHL----ELSEDVLAEIEAV 337 >all0827 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family Length = 346 Score = 236 bits (601), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 0/362 (0%), Positives = 0/362 (0%), Gaps = 29/362 (8%) Query: 3 MPDLFAPYELKALXXXXLKNRVVMPPMCQYAVDKQDGIPNDWHFVHYVSRAVGGTGFIIV 62 M P+ + M Q + + D + V + V Sbjct: 1 MQYHRIPHSSLEVS---TLGLGTMTFGEQNS--EADAHAQLDYAVAQGINLIDVAEMYPV 55 Query: 63 EMTGIHPDGRITNQDTGIWSDEHIAAYRRLTDAVHTQGARIAIQLGHAGRKAQDAEPP-- 120 T + + ++ Sbjct: 56 PPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALH 115 Query: 121 --------------VAPSAIPFDANSKTPRELRTEEIAGLVEAYREGARRAVEAGFDTVE 166 T+ + A + Sbjct: 116 DSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRY 175 Query: 167 LHGAHGYLIHQFHSPLTNVREDEYGA---DPVLFGEQVTRAVREVLPVEMPLLMRVSAKE 223 + ++ + D + V + + ++ Sbjct: 176 IGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSC 235 Query: 224 YVEGGYNEDYALEFCRRYKAAGVDMFHVXXXXXXXXXXXXXXXXXXAYQVALAEYIRSGL 283 G Y + Sbjct: 236 LGFGTLTGKYLNGAKPAGARNTLFSRFT---RYSGEQTQKAVAAYVDIARRHGLDPAQMA 292 Query: 284 QVPVIAVGRLESYEEAQSIVTGEKAELVAVGRGMLSDPYWALHAEEALGGIDKANVPKPY 343 V + S + + K + ++ + D + A + Sbjct: 293 LAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEIEAVHQVY-- 350 Query: 344 ER 345 Sbjct: 351 352 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 26,033,992 Number of extensions: 1076017 Number of successful extensions: 2294 Number of sequences better than 1.0e-05: 82 Number of HSP's gapped: 2100 Number of HSP's successfully gapped: 83 Length of query: 351 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 244 Effective length of database: 26,037,693 Effective search space: 6353197092 Effective search space used: 6353197092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)