BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0014.p (294 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1917 [G] COG0726 Predicted xylanase/chitin deacetylase 174 1e-43 BS_yjeA_2 [G] COG0726 Predicted xylanase/chitin deacetylase 145 6e-35 all4345 [G] COG0726 Predicted xylanase/chitin deacetylase 127 2e-29 SPy1370_2 [G] COG0726 Predicted xylanase/chitin deacetylase 126 4e-29 alr1793 [G] COG0726 Predicted xylanase/chitin deacetylase 120 3e-27 >BH1917 [G] COG0726 Predicted xylanase/chitin deacetylase Length = 276 Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 89/214 (41%), Positives = 126/214 (58%), Gaps = 2/214 (0%) Query: 83 LLRKYPETIKTRGPH-RKQIALTFDDVPDPRFTPQVLDVLRRYHVHATFFIVGSRAEKHP 141 L ++YP+T+ GP +IALTFDD PDPRFTPQVLDVL+ Y+V ATFF++G RAE+ P Sbjct: 63 LQQRYPDTVVLAGPTTANRIALTFDDGPDPRFTPQVLDVLQEYNVPATFFVMGRRAERFP 122 Query: 142 GLVARMIREGHTVGNHSYNHPQF-GKISVNAFRTQIIRTENIIKTTAGYKPRLIRPPYGD 200 LV RM EGH +GNHSY+HP F + V ++++TE II+ GY+PR R PYG Sbjct: 123 DLVTRMAAEGHVIGNHSYSHPNFVVEDDVALLEQEVLQTEAIIQNLVGYRPRFFRAPYGF 182 Query: 201 ISEPQLKWAKAHGYKLVNWNVDSLDWKGLSKSQVRXXXXXXXXXXXXXLQHXXXXXXSDL 260 + ++ +V W++D+LDW+ +V L H D Sbjct: 183 LYNELVEKLAELNNTVVAWSIDTLDWRERPAEEVAFSVISSAQPGSIVLMHDGAEADGDR 242 Query: 261 RGTIQALPEVISIMRNRGYTFVTVPQLLQINKEK 294 TI+AL ++I ++ +G+ FVTV +L+ I EK Sbjct: 243 TQTIEALRQIIPTLQEQGFEFVTVSELIGIPYEK 276 >BS_yjeA_2 [G] COG0726 Predicted xylanase/chitin deacetylase Length = 335 Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 12/203 (5%), Positives = 35/203 (17%), Gaps = 9/203 (4%) Query: 92 KTRGPHRKQIALTFDDVPDPRFTPQVLDVLRRYHVHATFFIVGSRAEKHPGLVARMIREG 151 + K+ A+ + + I E Sbjct: 21 ASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMN 80 Query: 152 HTVGNHSYNHPQFGKISVNAFRTQIIRTENIIKTTAGYKPRLIRPPYGDISEPQLKWAKA 211 + H + ++ Q+ R+ + + P + + Sbjct: 81 LWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHY-DMYRLMN 139 Query: 212 HGYKLVNWNVDSLDWKGLSKSQVRXXXXXXXXXXXXXLQHXXXXXXSDLRGTIQALPEVI 271 L S S + + + + Sbjct: 140 EVDDL--LQQVLDCPAAESLSYQQAFLRYLEIDPLSADKTQLREVAAK------LDLSNV 191 Query: 272 SIMRNRGYTFVTVPQLLQINKEK 294 + T + + + Sbjct: 192 ADTEEDRDTLLQLLFTFGVEPNI 214 >all4345 [G] COG0726 Predicted xylanase/chitin deacetylase Length = 305 Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 16/199 (8%) Query: 98 RKQIALTFDDVPDPRFTPQVLDVLRRYHVHATFFIVGSRAEKHPGLVARMIREGHTVGNH 157 +K IALTFDD P P T QVLD+L++ ++ ATFF+VG + +P L+ R+ EGH +GNH Sbjct: 105 QKVIALTFDDGPWPESTTQVLDILKQNNIKATFFVVGQNVKNYPDLLRRVAAEGHAIGNH 164 Query: 158 SYNH------PQFGKISVNAFRTQIIRTENIIKTTAGYKPRLIRPPYGDISEPQLKWAKA 211 +++H PQ VN T N+I G K L RPP G ++ + +A+ Sbjct: 165 TWHHWYHFMNPQVAAYEVN-------NTTNLIYQITGVKTDLFRPPGGMMNNGLVSYARN 217 Query: 212 HGYKLVNWNVDSLDWKGLSKSQVRXXXXXXXXXXXXXLQHXXXXXXSDLRGTIQALPEVI 271 + Y ++ W+ DS+D+ S ++ L H + T+QALPE+I Sbjct: 218 NKYAVIMWSSDSIDYSRPSVPRLINNVFRLAKPGGIVLMHDGGGNRTQ---TVQALPEII 274 Query: 272 SIMRNRGYTFVTVPQLLQI 290 + R +GY+FVTVP+LL++ Sbjct: 275 ARFRKQGYSFVTVPELLEM 293 >SPy1370_2 [G] COG0726 Predicted xylanase/chitin deacetylase Length = 223 Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 69/198 (34%), Positives = 101/198 (51%), Gaps = 10/198 (5%) Query: 90 TIKTRGPHRKQIALTFDDVPDPRFTPQVLDVLRRYHVHATFFIVGSRAEKHPGLVARMIR 149 T K + P +K +ALTFDD PDP TPQVLD+L +Y TFF++GS+ + L R+ Sbjct: 32 TYKEQHP-KKLVALTFDDGPDPTTTPQVLDILAKYQAKGTFFMIGSKVVNNENLTKRVSD 90 Query: 150 EGHTVGNHSYNHPQFGKISVNAFRTQIIRTENIIKTTAGYKPRLIRPPYGDISEPQLKWA 209 GH + NH+++HP +SV+ + Q+ T I+ G KPR +RPPYG + Sbjct: 91 AGHEIANHTWDHPNLTNLSVSEIQHQVNMTNQAIEKACGKKPRYLRPPYGATNA---TVQ 147 Query: 210 KAHGYKLVNWNVDSLDWKGLSKSQVRXXXXXXXXXXXXXLQHXXXXXXSDLRGTIQALPE 269 ++ G + W VD+ DW+ S + L H + TI ALP Sbjct: 148 QSSGLTQMLWTVDTRDWENHSTDGIMTNVKNQLQPGGVVLMHDIH------QTTINALPT 201 Query: 270 VISIMRNRGYTFVTVPQL 287 V+ ++ GY VTV +L Sbjct: 202 VMEYLKAEGYECVTVSEL 219 >alr1793 [G] COG0726 Predicted xylanase/chitin deacetylase Length = 359 Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 9/195 (4%), Positives = 21/195 (10%), Gaps = 5/195 (2%) Query: 97 HRKQIALTFDDVPDPRFTPQVLDVLRRYHVHATFFIVGSRAEKHPGLVARMIREGHTVGN 156 P + + +H + L Sbjct: 98 AVHNEEQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIV 157 Query: 157 HSYNHPQFGKISVNAFRTQIIRTENIIKTTAGYKPRLIRPPYGDISEPQLKWAKAHGYKL 216 + + I Sbjct: 158 SHFAR-ADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGIILYG 216 Query: 217 VNWNVDSLDWKGLSKSQVRXXXXXXXXX-XXXXLQHXXXXXXSDLRGTIQALPEVISIMR 275 V+ D V + + + + M Sbjct: 217 VSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEP---VGYGGTWVSERDTRLGVVAMG 273 Query: 276 NRGYTFVTVPQLLQI 290 P + Sbjct: 274 YGDGYPRAAPSGTPV 288 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,753,829 Number of extensions: 642005 Number of successful extensions: 1319 Number of sequences better than 1.0e-05: 40 Number of HSP's gapped: 1282 Number of HSP's successfully gapped: 40 Length of query: 294 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 188 Effective length of database: 26,153,027 Effective search space: 4916769076 Effective search space used: 4916769076 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 115 (48.9 bits)