BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0008.p (159 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2353 [E] COG1126 ABC-type polar amino acid transport system, ... 199 2e-51 SP0824 [E] COG1126 ABC-type polar amino acid transport system, A... 188 2e-48 L37916 [E] COG1126 ABC-type polar amino acid transport system, A... 188 3e-48 SPy1506 [E] COG1126 ABC-type polar amino acid transport system, ... 186 1e-47 BS_glnQ [E] COG1126 ABC-type polar amino acid transport system, ... 177 7e-45 >lin2353 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 64 Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 0/141 (0%), Positives = 0/141 (0%) Query: 1 MIAVKNLQKSFGKLEILKGIDLQIHKGEVVVVIGPSGSGKSTFLRCLNLLEQPTGGEITF 60 M F + + + + L + T G Sbjct: 1 MRYDNVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNG 60 Query: 61 EGASITDKRHDINVTREKMGMVFQQFNLFPHKTVLQNIMLAPLKVKKQQPAEAEKIALEL 120 Sbjct: 61 120 Query: 121 LQTVGLADKRDAYPAQLSGGQ 141 Sbjct: 121 141 >SP0824 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 244 Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 91/141 (64%), Positives = 112/141 (79%) Query: 1 MIAVKNLQKSFGKLEILKGIDLQIHKGEVVVVIGPSGSGKSTFLRCLNLLEQPTGGEITF 60 +I ++NL KSFGK E+LKGI+L+I +GEVVV+IGPSGSGKST LR +NLLE+ T G++ F Sbjct: 5 LIKIENLHKSFGKNEVLKGINLEIKRGEVVVIIGPSGSGKSTLLRSMNLLEEATKGKVIF 64 Query: 61 EGASITDKRHDINVTREKMGMVFQQFNLFPHKTVLQNIMLAPLKVKKQQPAEAEKIALEL 120 EG ITDK++D+ REKMGMVFQQFNLFP+ TV++NI L+P+K K A AEK A EL Sbjct: 65 EGVDITDKKNDLFAMREKMGMVFQQFNLFPNMTVMENITLSPIKTKGDSKAVAEKRAQEL 124 Query: 121 LQTVGLADKRDAYPAQLSGGQ 141 L+ VGL DK DAYP LSGGQ Sbjct: 125 LEKVGLPDKADAYPQSLSGGQ 145 >L37916 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 244 Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 92/141 (65%), Positives = 112/141 (79%) Query: 1 MIAVKNLQKSFGKLEILKGIDLQIHKGEVVVVIGPSGSGKSTFLRCLNLLEQPTGGEITF 60 +I +KNL K FGK E+LKG+D+QI KGEVVV+IGPSGSGKSTFLR +NLLE+PT G++ F Sbjct: 5 LIEIKNLHKYFGKNEVLKGLDIQIKKGEVVVMIGPSGSGKSTFLRTMNLLEKPTDGQVYF 64 Query: 61 EGASITDKRHDINVTREKMGMVFQQFNLFPHKTVLQNIMLAPLKVKKQQPAEAEKIALEL 120 EG +I DK D+ REKMGMVFQQFNLFP+ TVL+N+ LAP+K K EA+K A +L Sbjct: 65 EGVNIADKSVDVFKHREKMGMVFQQFNLFPNMTVLENLCLAPVKTGKMTKEEAKKTAEDL 124 Query: 121 LQTVGLADKRDAYPAQLSGGQ 141 LQ VGL+DK +AYP LSGGQ Sbjct: 125 LQRVGLSDKAEAYPQALSGGQ 145 >SPy1506 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 244 Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 91/141 (64%), Positives = 110/141 (78%) Query: 1 MIAVKNLQKSFGKLEILKGIDLQIHKGEVVVVIGPSGSGKSTFLRCLNLLEQPTGGEITF 60 +I++K+L K +G E+LKGIDL I GEVVV+IGPSGSGKST LR +NLLE PT G+I F Sbjct: 5 IISIKDLHKYYGHNEVLKGIDLDIMPGEVVVIIGPSGSGKSTLLRTMNLLEVPTKGQIRF 64 Query: 61 EGASITDKRHDINVTREKMGMVFQQFNLFPHKTVLQNIMLAPLKVKKQQPAEAEKIALEL 120 EG ITDK++DI REKMGMVFQQFNLFP+ T+L+NI L+P+K K AEA+K AL L Sbjct: 65 EGIDITDKKNDIFSMREKMGMVFQQFNLFPNMTILENITLSPIKTKGMAKAEADKTALSL 124 Query: 121 LQTVGLADKRDAYPAQLSGGQ 141 L VGL++K AYPA LSGGQ Sbjct: 125 LDKVGLSEKAKAYPASLSGGQ 145 >BS_glnQ [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 242 Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 83/141 (58%), Positives = 106/141 (75%) Query: 1 MIAVKNLQKSFGKLEILKGIDLQIHKGEVVVVIGPSGSGKSTFLRCLNLLEQPTGGEITF 60 MI +N+ K +G +LK I+LQI KGEVVV+IGPSGSGKST LRC+N LE G +T Sbjct: 1 MITFQNVNKHYGDFHVLKQINLQIEKGEVVVIIGPSGSGKSTLLRCINRLESINEGVLTV 60 Query: 61 EGASITDKRHDINVTREKMGMVFQQFNLFPHKTVLQNIMLAPLKVKKQQPAEAEKIALEL 120 G +I D++ DIN R+ +GMVFQ F+L+PHKTVLQNIMLAP+KV +Q P +A++ A Sbjct: 61 NGTAINDRKTDINQVRQNIGMVFQHFHLYPHKTVLQNIMLAPVKVLRQSPEQAKETARYY 120 Query: 121 LQTVGLADKRDAYPAQLSGGQ 141 L+ VG+ DK DAYP+QLSGGQ Sbjct: 121 LEKVGIPDKADAYPSQLSGGQ 141 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 10,652,086 Number of extensions: 372786 Number of successful extensions: 6028 Number of sequences better than 1.0e-05: 1601 Number of HSP's gapped: 4794 Number of HSP's successfully gapped: 1646 Length of query: 159 Length of database: 38,378,431 Length adjustment: 98 Effective length of query: 61 Effective length of database: 27,075,699 Effective search space: 1651617639 Effective search space used: 1651617639 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 111 (47.4 bits)