BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0006.p (327 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2352_1 [ET] COG0834 ABC-type amino acid transport/signal tran... 195 7e-50 SP0112 [ET] COG0834 ABC-type amino acid transport/signal transdu... 165 1e-40 SA1675_1 [ET] COG0834 ABC-type amino acid transport/signal trans... 157 3e-38 SP1394 [ET] COG0834 ABC-type amino acid transport/signal transdu... 147 2e-35 SPy0778 [ET] COG0834 ABC-type amino acid transport/signal transd... 140 2e-33 >lin2352_1 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 271 Score = 195 bits (496), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 94/217 (43%), Positives = 149/217 (68%), Gaps = 1/217 (0%) Query: 109 DFPPYEFHKVVDGKDTIVGFDIEIAKEIAADMGAKLEIKDLSFDSLLNELSSGRVDMVIS 168 D+PPYEFH+ +DGKD +VGFD+ IA++IA D+ KL+IK+++FDSLL L +G++DM+IS Sbjct: 52 DYPPYEFHQTIDGKDKVVGFDVSIAEKIAKDLDVKLDIKEMNFDSLLGSLKTGKIDMIIS 111 Query: 169 GLSPTPERAKAVGLSDIYYKAEQAVVVREADKDKFATMDSLKGIKLGVQTGSIQEDIAKG 228 G+SPTPER K V SD Y +Q VV+R+ DK+KF +++ GIK+G Q + QE++AK Sbjct: 112 GMSPTPERQKEVDFSDPYMFVQQRVVIRKTDKEKFTSVNDFNGIKVGAQKQTTQEELAKN 171 Query: 229 -IEGAQLTSLGKISEIVLQLQSNRVDASIMEGPVAKSFVKNVKGLAITDAKPEVEDDGYV 287 + G+ + SL K+ +++L L+SN++DA ++EGPVA++++ K LA+ D K Sbjct: 172 ELVGSDVVSLQKVPDLILNLKSNKLDAVVLEGPVAEAYISQDKTLALADIKFVNGSKETA 231 Query: 288 IGVKKGNDELLGQVNKTLARLNSEGKIDEYVAAASEL 324 I + KG+ L +VN ++ + G + +Y A++L Sbjct: 232 IAMPKGSTALQEKVNASIKDIQDTGLLKKYQNEANKL 268 >SP0112 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 268 Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 91/215 (42%), Positives = 138/215 (64%), Gaps = 2/215 (0%) Query: 109 DFPPYEFHKVVDGKDTIVGFDIEIAKEIAADMGAKLEIKDLSFDSLLNELSSGRVDMVIS 168 DF P+E+ KVVDGK+ IVG DIE+AK IA +G +LE+ +SFD++L + SG+ D+ IS Sbjct: 47 DFAPFEYQKVVDGKNQIVGSDIELAKAIATKLGVELELSPMSFDNVLASVQSGKADLAIS 106 Query: 169 GLSPTPERAKAVGLSDIYYKAEQAVVVREADKDKFATMDSLKGIKLGVQTGSIQEDIAKG 228 G+S T ER+K S YY A+ ++V+++D + +++ L K+G Q GSIQE +AK Sbjct: 107 GVSKTDERSKVFDFSIPYYTAKNKLIVKKSDLTTYQSVNDLAQKKVGAQKGSIQETMAKD 166 Query: 229 -IEGAQLTSLGKISEIVLQLQSNRVDASIMEGPVAKSFVKNVKGLAITDAKPEVE-DDGY 286 ++ + L SL K ++ L+S +VDA I E PV+K FV+N LAI D E E DD Y Sbjct: 167 LLQNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVSKGFVENNPDLAIADLNFEKEQDDSY 226 Query: 287 VIGVKKGNDELLGQVNKTLARLNSEGKIDEYVAAA 321 + +KK + +L V+KT+ +L G++D+ + A Sbjct: 227 AVAMKKDSKKLKEAVDKTIQKLKESGELDKLIEDA 261 >SA1675_1 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 236 Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 82/215 (38%), Positives = 137/215 (63%), Gaps = 1/215 (0%) Query: 109 DFPPYEFHKVVDGKDTIVGFDIEIAKEIAADMGAKLEIKDLSFDSLLNELSSGRVDMVIS 168 D+ P EF V+GK G DI++AK+IA D KL+I ++SFDSLL L +G++D++IS Sbjct: 6 DYAPMEFEHTVNGKTEYAGVDIDLAKKIAKDNNLKLKIVNMSFDSLLGALKTGKIDIIIS 65 Query: 169 GLSPTPERAKAVGLSDIYYKAEQAVVVREADKDKFATMDSLKGIKLGVQTGSIQEDIAKG 228 G++ TPER K V SD Y + ++V++ +++ + K+G Q G+ QE IA+ Sbjct: 66 GMTSTPERKKQVDFSDSYMMTKNIMLVKKDKVNEYKDIKDFNNKKVGAQKGTEQEKIAQT 125 Query: 229 -IEGAQLTSLGKISEIVLQLQSNRVDASIMEGPVAKSFVKNVKGLAITDAKPEVEDDGYV 287 IE A +TSL ++ +++L L+S +V+ +++E PVA++++K L I++ K E+ V Sbjct: 126 EIENASITSLSRLPDVILALKSGKVEGAVVEKPVAEAYLKQNPKLGISNVKFNEEEKDTV 185 Query: 288 IGVKKGNDELLGQVNKTLARLNSEGKIDEYVAAAS 322 I V K + +LL Q+NKT+ + +G ID+Y+ A+ Sbjct: 186 IAVPKDSPKLLSQINKTIKEVKDKGLIDKYMTNAA 220 >SP1394 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 271 Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 134/220 (60%), Gaps = 2/220 (0%) Query: 109 DFPPYEFHKVVDGKDTIVGFDIEIAKEIAADMGAKLEIKDLSFDSLLNELSSGRVDMVIS 168 D+ P+EF +VDGK+ +VG DI++A+ IA ++G KLEI +SFD++L L +G+ D+ ++ Sbjct: 49 DYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVKLEISSMSFDNVLTSLQTGKADLAVA 108 Query: 169 GLSPTPERAKAVGLSDIYYKAEQAVVVREADKDKFATMDSLKGIKLGVQTGSIQEDIAK- 227 G+S T ER + S YY+ + + +VR+AD +K+ + SL+ + Q G++ E + K Sbjct: 109 GISATDERKEVFDFSIPYYENKISFLVRKADVEKYKDLTSLESANIAAQKGTVPESMVKE 168 Query: 228 GIEGAQLTSLGKISEIVLQLQSNRVDASIMEGPVAKSFVKNVKGLAITDAKPEVED-DGY 286 + QLTSL + E V +LQ+ ++DA M+ PVA S+ GLA+ +++D D Sbjct: 169 QLPKVQLTSLTNMGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDAN 228 Query: 287 VIGVKKGNDELLGQVNKTLARLNSEGKIDEYVAAASELAE 326 + ++K +D+L V+K + +L EG Y+ A+ L E Sbjct: 229 AVALRKNSDDLKEVVDKVVQKLKDEGTYQSYLEKAASLTE 268 >SPy0778 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 270 Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 127/213 (59%), Gaps = 2/213 (0%) Query: 109 DFPPYEFHKVVDGKDTIVGFDIEIAKEIAADMGAKLEIKDLSFDSLLNELSSGRVDMVIS 168 D+ P+EF +V+GKDTIVG D+++A+ IA ++ LE+ +SFD++L+ L +G+ D+ IS Sbjct: 47 DYAPFEFKALVNGKDTIVGADVQLAQAIADELDVDLELSPMSFDNVLSSLQTGKADLAIS 106 Query: 169 GLSPTPERAKAVGLSDIYYKAEQAVVVREADKDKFATMDSLKGIKLGVQTGSIQEDIAK- 227 G+S T ERAK S YY+AE A+V+R +D + L G K+ Q GSI+E + K Sbjct: 107 GISHTKERAKVYDFSIPYYQAENAIVMRASDAKVTKNISDLNGKKVAAQKGSIEEGLVKI 166 Query: 228 GIEGAQLTSLGKISEIVLQLQSNRVDASIMEGPVAKSFVKNVKGLAITDAKPEVED-DGY 286 + A L SL + E + +L++ +V A +E PVA F+ K LA+ + D D Sbjct: 167 QLPKANLISLTAMGEAINELKAGQVYAVTLEAPVAAGFLAQHKDLALAPFSLKTSDGDAK 226 Query: 287 VIGVKKGNDELLGQVNKTLARLNSEGKIDEYVA 319 + + K + +L VNK +A+L+ + + ++A Sbjct: 227 AVALPKNSGDLTKAVNKVIAKLDEQERYKSFIA 259 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.134 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,136,441 Number of extensions: 822698 Number of successful extensions: 1525 Number of sequences better than 1.0e-05: 127 Number of HSP's gapped: 1441 Number of HSP's successfully gapped: 130 Length of query: 327 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 220 Effective length of database: 26,037,693 Effective search space: 5728292460 Effective search space used: 5728292460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 116 (49.3 bits)