BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0400.0007.p
         (302 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0246 [GEPR] COG0477 Permeases of the major facilitator superfa...    54   2e-07

>PA0246 [GEPR] COG0477 Permeases of the major facilitator superfamily
          Length = 501

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 63/125 (50%)

Query: 45  EYDRIDLLSILFVIEPLTRSAALLISGSAGEYFGRKKLYLWSVGAYALSIFLCALSPDGF 104
           +Y  +DLL+ +     +  + ++ I G  G+ +GR++L L+++  +  +  LC L+    
Sbjct: 42  DYADLDLLAWVISAYMVAMTVSMPIYGKLGDLYGRRRLMLFAIVVFTAASLLCGLAQSMG 101

Query: 105 LFLIAQGASGFFWGLFFSNVFSILNDVVPEKEYPVRLATLQTVNFSVLIIGPIICGLLTE 164
             ++A+   G   G   +   +I+ D+VP +E         ++     + GP++ GLLTE
Sbjct: 102 QLVLARVLQGIGAGGLMAVSQAIIGDIVPPRERGRYQGYFSSMYAIASVAGPVLGGLLTE 161

Query: 165 YWNWR 169
           Y +W 
Sbjct: 162 YLSWH 166


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.329    0.143    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 19,782,252
Number of extensions: 805046
Number of successful extensions: 2134
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2168
Number of HSP's successfully gapped: 10
Length of query: 302
Length of database: 38,378,431
Length adjustment: 106
Effective length of query: 196
Effective length of database: 26,153,027
Effective search space: 5125993292
Effective search space used: 5125993292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 115 (48.9 bits)