BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0397.0040.p
         (235 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC3022 [R] COG1073 Hydrolases of the alpha/beta superfamily          248   4e-66

>CAC3022 [R] COG1073 Hydrolases of the alpha/beta superfamily
          Length = 228

 Score =  248 bits (634), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 117/230 (50%), Positives = 158/230 (68%), Gaps = 3/230 (1%)

Query: 5   QEFRIEGIPAILWGDQSDKLFVAIHGNMSNKADDAIVIFAGEAVRRGYQVISFDLPEHGD 64
            + +I+ IPAILWG+ SDK+++ +HG MS+K  ++   FA  AV RGYQV+SFDLPEHG+
Sbjct: 2   NKIKIKNIPAILWGETSDKVYIFVHGKMSSK--ESAHEFATIAVERGYQVLSFDLPEHGE 59

Query: 65  RKEEAYSCKVQNCVHDLDVIMRYAQRLSDDISIFACSMGVYFSLLAYRDLPLKQCLFLSP 124
           RK E Y C V N VHDL VI  YA+R    IS+F CS+G YFSLLAY++  + +CLF SP
Sbjct: 60  RKNEDYKCNVWNGVHDLKVIGDYAKRNWKSISLFGCSLGAYFSLLAYKNFSINKCLFQSP 119

Query: 125 VLDMKRIIENMMAWFGISEDRLKAEQEVATPVGQTLYWDYYCYVNSHPVDAWHKPTSILY 184
           ++DM+ +I  M  WF ++E+ L+ ++E++TPV + L WDYYCYV  HP+D W  PT+I+Y
Sbjct: 120 IVDMEHLIGKMFKWFNVTEELLREKKEISTPV-EILSWDYYCYVKDHPIDKWCVPTAIIY 178

Query: 185 GSDDNLCEFDVVSAFASRFHCGLKVMEQGEHYFHTKEQLQFFRQWLKEQI 234
           G+ DNL    V+  FA RF   L V    EH FHTKEQ +   +W K+ I
Sbjct: 179 GTKDNLQSSYVIDTFAKRFKSDLTVSVDSEHDFHTKEQAEAVIEWFKKCI 228


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.325    0.139    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 17,608,201
Number of extensions: 672962
Number of successful extensions: 1774
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1772
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 38,378,431
Length adjustment: 103
Effective length of query: 132
Effective length of database: 26,499,029
Effective search space: 3497871828
Effective search space used: 3497871828
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)