BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0024.p (272 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all5282 [G] COG0395 ABC-type sugar transport system, permease co... 152 5e-37 lin0219 [G] COG0395 ABC-type sugar transport system, permease co... 148 8e-36 BS_yurM [G] COG0395 ABC-type sugar transport system, permease co... 147 2e-35 ML1425 [G] COG0395 ABC-type sugar transport system, permease com... 143 3e-34 MT2099 [G] COG0395 ABC-type sugar transport system, permease com... 135 7e-32 >all5282 [G] COG0395 ABC-type sugar transport system, permease component Length = 275 Score = 152 bits (385), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 94/255 (36%), Positives = 133/255 (52%), Gaps = 6/255 (2%) Query: 20 IVLVPMAVMISVSLQTPSTINPLSLPKNPQW--GNYTEAFRTGNLLPYFGNSILVLVMTT 77 IVL P+ V+ S P + N LPKN W NY +A++ G L F NS LV + T Sbjct: 25 IVLSPLFVVFLTSFAPPGS-NLELLPKN-NWSFANYRDAWQRGKFLLAFANSTLVAIAVT 82 Query: 78 AAAISVSVLAAYGLHHGKRYKSDVMSTFFLMGLILPAFSGTIPAFLVLRQIHLLNTHIGL 137 A I S LA Y L K + L LI+P IP FLVL+ HL+NT+ L Sbjct: 83 AFQIVTSALAGYALARLKFRGRQTLLLIVLATLIIPFQLLVIPIFLVLKWGHLINTYGAL 142 Query: 138 SLIQIASGLALPIFLYVNFFKTVPSEIEEAALVDGCGPWRTFVRIIFPLTLPITATCIIV 197 L +G IFL +F+T+P E+EEAA +DG + +++ PL P T + Sbjct: 143 ILPTAVNGFG--IFLLRQYFQTIPVELEEAATIDGANRLQILWQVMLPLARPALVTLFLF 200 Query: 198 VAINSWNDFFNPLVYLSSPEMRTLPVGLMAFKSQYNTNWPQMFAGAALVALPIIMLYLFV 257 I WND F PLV+ + PE+RT+ + L F+ Q+ NWP M A + +P+++L+L Sbjct: 201 TFIAEWNDLFKPLVFTTKPELRTVQLALAEFQEQFTNNWPLMMAAVTIATVPVMVLFLIG 260 Query: 258 QRFIIKGLVGGAVKG 272 QR I+G+ +K Sbjct: 261 QRQFIRGIATTGIKN 275 >lin0219 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 144/264 (54%), Gaps = 5/264 (1%) Query: 11 YTVLAIALIIVLVPMAVMISVSLQTPST---INPLSLPKNPQWGNYTEAFRTGNLLPYFG 67 YT++ + II+L+P MIS + +T + + P +PK P N+T+ F +L + Sbjct: 20 YTIICLGGIIMLMPFVWMISTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLM 79 Query: 68 NSILVLVMTTAAAISVSVLAAYGLHHGKRYKSDVMSTFFLMGLILPAFSGTIPAFLVLRQ 127 NS++V V+TT + +AAY + D + +L +++PA IP F++++Q Sbjct: 80 NSVVVAVVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQ 139 Query: 128 IHLLNTHIGLSLIQIASGLALPIFLYVNFFKTVPSEIEEAALVDGCGPWRTFVRIIFPLT 187 L+++ GL + + S FL F +P E+EEAA +DG + F ++I PL Sbjct: 140 FGWLDSYAGLIVPALFS--VFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLA 197 Query: 188 LPITATCIIVVAINSWNDFFNPLVYLSSPEMRTLPVGLMAFKSQYNTNWPQMFAGAALVA 247 P AT I+ + SWN + PL+ SS EM TLP+GL + +Y TN+ M AG + Sbjct: 198 KPTFATLGILTFMQSWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISV 257 Query: 248 LPIIMLYLFVQRFIIKGLVGGAVK 271 +PI+ +YLF Q++ I+G+ +K Sbjct: 258 IPILAVYLFAQKYFIQGMAMSGMK 281 >BS_yurM [G] COG0395 ABC-type sugar transport system, permease component Length = 300 Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/268 (30%), Positives = 145/268 (54%), Gaps = 3/268 (1%) Query: 7 KTSIYTVLAIALIIVLVPMAVMISVSLQTPSTI--NPLSLPKNPQWGNYTEAFRTGNLLP 64 +TS++ L + LI + P+ M+ + + I + SLP + N+ A+ G + Sbjct: 34 ETSVWVFLFLYLIAIAYPLLWMVMSAFKNSDDIFEHSWSLPSSWHPENFVSAWNQG-ISS 92 Query: 65 YFGNSILVLVMTTAAAISVSVLAAYGLHHGKRYKSDVMSTFFLMGLILPAFSGTIPAFLV 124 YF NS++V +T + +S AAYGL + L GL+L +P + + Sbjct: 93 YFMNSVIVTALTCVITVFISAWAAYGLSRFEFKGKGFFLVLCLGGLMLTPQVSLVPLYSI 152 Query: 125 LRQIHLLNTHIGLSLIQIASGLALPIFLYVNFFKTVPSEIEEAALVDGCGPWRTFVRIIF 184 ++ + L NT+ L L A + I L ++F ++ E+EEAA +DGC + F RI Sbjct: 153 IQSLGLYNTYWALILPYAAYRIPFTIILIRSYFLSISKELEEAAYLDGCTSFGVFFRIFL 212 Query: 185 PLTLPITATCIIVVAINSWNDFFNPLVYLSSPEMRTLPVGLMAFKSQYNTNWPQMFAGAA 244 P+++PI T I+ A ++WN+F ++++ +RT+P GLM F+ T+W + AG Sbjct: 213 PMSVPILVTSGILTAYHTWNEFMFAIIFIDDENLRTIPAGLMQFRDALQTDWGVLLAGLT 272 Query: 245 LVALPIIMLYLFVQRFIIKGLVGGAVKG 272 + A PII+L+L +Q++ ++G+ G+VKG Sbjct: 273 ISAAPIIILFLLMQKYFVRGIASGSVKG 300 >ML1425 [G] COG0395 ABC-type sugar transport system, permease component Length = 283 Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 140/274 (51%), Gaps = 8/274 (2%) Query: 3 TTLQKTSIYTVLAIALIIVLVPMAVMISVSLQTPSTI-NPLSLPKNPQWGNYTEAFRTGN 61 + L+ +Y L L P+ +S SL+ I P LP +PQW NYTE F + Sbjct: 14 SVLRAVVVYIALTGIAWCALFPIVWALSGSLKKEGEIREPTLLPAHPQWSNYTEVF---D 70 Query: 62 LLPY---FGNSILVLVMTTAAAISVSVLAAYGLHHGKRYKSDVMSTFFLMGLILPAFSGT 118 L+P+ F N++L T + LA Y + D + +L L++P Sbjct: 71 LIPFWRMFFNTVLYAGYVTVGQVFFCSLAGYAFARLQFRGRDALFVLYLGTLMMPLTVTI 130 Query: 119 IPAFLVLRQIHLLNTHIGLSLIQIASGLALPIFLYVNFFKTVPSEIEEAALVDGCGPWRT 178 IP F+++R + +T + ++ G A +L FF+T+PS++EEAA++DGC PW+ Sbjct: 131 IPQFILMRVLGWTDTPWAM-IVPGLFGSAFGTYLMRQFFRTLPSDLEEAAILDGCSPWQI 189 Query: 179 FVRIIFPLTLPITATCIIVVAINSWNDFFNPLVYLSSPEMRTLPVGLMAFKSQYNTNWPQ 238 + R++ P P ++ +N WNDF PL+ + + TL +GL+ + +Y T WP Sbjct: 190 YWRVLLPHAKPAVGVLAVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRMRGEYGTCWPV 249 Query: 239 MFAGAALVALPIIMLYLFVQRFIIKGLVGGAVKG 272 + A + L+ LP++++Y QR ++G+ + G Sbjct: 250 IMATSMLIILPLVIIYTIAQRAFVRGITVTRIGG 283 >MT2099 [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 22 LVPMAVMISVSLQTPSTI-NPLSLPKNPQWGNYTEAFRTGNLLPYFGNSILVLVMTTAAA 80 L P+ +S SL+ + P P +PQW NY E F F N++L TA Sbjct: 30 LFPIIWALSGSLKADGEVTEPTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTAGQ 89 Query: 81 ISVSVLAAYGLHHGKRYKSDVMSTFFLMGLILPAFSGTIPAFLVLRQIHLLNTHIGLSLI 140 + LA Y + D + +L L++P IP F+++R + ++T + ++ Sbjct: 90 VFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQFILMRIVGWVDTPWAM-IV 148 Query: 141 QIASGLALPIFLYVNFFKTVPSEIEEAALVDGCGPWRTFVRIIFPLTLPITATCIIVVAI 200 G A +L FF+T+P+++EEAA++DGC PW+ + RI+ P + P ++ + Sbjct: 149 PGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWV 208 Query: 201 NSWNDFFNPLVYLSSPEMRTLPVGLMAFKSQYNTNWPQMFAGAALVALPIIMLYLFVQRF 260 N WNDF PL+ + + TL +GL+ + +Y WP + A + L+ +P+++LY QR Sbjct: 209 NVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQRS 268 Query: 261 IIKGL 265 ++G+ Sbjct: 269 FVRGI 273 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.141 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,594,887 Number of extensions: 694225 Number of successful extensions: 2835 Number of sequences better than 1.0e-05: 191 Number of HSP's gapped: 2622 Number of HSP's successfully gapped: 191 Length of query: 272 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 167 Effective length of database: 26,268,361 Effective search space: 4386816287 Effective search space used: 4386816287 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)