BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0023.p (293 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1896 [G] COG1175 ABC-type sugar transport systems, permease co... 186 4e-47 BS_yurN [G] COG1175 ABC-type sugar transport systems, permease c... 177 1e-44 slr1202 [G] COG1175 ABC-type sugar transport systems, permease c... 177 2e-44 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 170 3e-42 TM0811 [G] COG1175 ABC-type sugar transport systems, permease co... 169 5e-42 >SP1896 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 100/280 (35%), Positives = 168/280 (60%), Gaps = 4/280 (1%) Query: 12 FIAPALLIYLLFFAGPIFSGLYYGFTDWNGFSFKADWVGLENFREAFRDPLLLTALKNMA 71 F+ LL+ +FF P+F G +Y FT+W G ++ +VGL NF+ F DP + A+ A Sbjct: 21 FVVIPLLLQAIFFYVPMFQGAFYSFTNWTGLTYNYKFVGLNNFKLLFMDPKFMNAIGFTA 80 Query: 72 ILSATVIVLQHSASILLAVLLDQKVKGIVWMRAVIFFPVILNTVVIGYVWSYMYAPMVGF 131 I++ ++V + + I +A +L+ K+KG + RA FFP +L+ + + ++ ++ Sbjct: 81 IIAIAMVVGEIALGIFIARVLNSKIKGQTFFRAWFFFPAVLSGLTVALIFKQVFNYG--- 137 Query: 132 LPKFFAAIGLEGLAGLDWLGDPGLAIYAIAFVMVWQYTGYSMMIYLAGLQSVSGEIYEAS 191 LP A+ +E LG AI+A FV++WQ ++I+LAGLQS+ EI EA+ Sbjct: 138 LPAIGNALHIEFFQ-TSLLGTKWGAIFAAVFVLLWQGVAMPIIIFLAGLQSIPTEITEAA 196 Query: 192 SIDGAGPWNKFWRVTLPLLIPSIIVNTVLSVIGCMKMFEHVFIMTQGGPANSTQTFGIMI 251 IDGA FW + LP L+PS+ + +L++ G + F+ VF MT GGP N+T + G+++ Sbjct: 197 RIDGATSKQVFWNIELPYLLPSVSMVFILALKGGLTAFDQVFAMTGGGPNNATTSLGLLV 256 Query: 252 YQYAFKTSQMGYGTAMAMILSVMILAVTFVQIKLLSRLEV 291 Y YAFK +Q GY A+A+IL +I+ ++ +Q+++ + E+ Sbjct: 257 YNYAFKNNQFGYANAIAVILFFLIVVISIIQLRVSKKFEI 296 >BS_yurN [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 94/276 (34%), Positives = 158/276 (57%), Gaps = 4/276 (1%) Query: 11 LFIAPALLIYLLFFAGPIFSGLYYGFTDWNGFSFKADWVGLENFREAFRDPLLLTALKNM 70 LF+ PAL ++LLF PIF ++ W+ FS + ++GL+N+ E F DP+ AL N Sbjct: 11 LFLVPAL-VFLLFVYIPIFENVFLSLFQWSSFSPEKTFIGLKNYVELFHDPVFYQALTNN 69 Query: 71 AILSATVIVLQHSASILLAVLLDQKV--KGIVWMRAVIFFPVILNTVVIGYVWSYMYAPM 128 + + IV Q ++LA +L+ K+ K + R V F PV+++ VI ++ ++Y P Sbjct: 70 VLYAVISIVCQVFGGLILAAVLEDKLVRKWSPFFRTVFFLPVVISMTVIALLFDFIYNPE 129 Query: 129 VGFLPKFFAAIGLEGLAGLDWLGDPGLAIYAIAFVMVWQYTGYSMMIYLAGLQSVSGEIY 188 G L + AIGL+ L WLGD A+ ++ FV WQ GY M+Y+ +Q + E+Y Sbjct: 130 TGLLNQLLQAIGLDQLTR-AWLGDDSTAMLSVIFVSQWQSVGYIAMLYIVSIQKIPDELY 188 Query: 189 EASSIDGAGPWNKFWRVTLPLLIPSIIVNTVLSVIGCMKMFEHVFIMTQGGPANSTQTFG 248 EA+ +DGAG +F+ +T+P V V+++ G +F +I+T GGP +++ Sbjct: 189 EAARLDGAGKIQQFFHITVPQTKEMSFVAVVMTLTGAFTVFNEPYILTGGGPGKASEVLS 248 Query: 249 IMIYQYAFKTSQMGYGTAMAMILSVMILAVTFVQIK 284 +Y+ AF MGY +A+A ++ ++ LA++ +Q+K Sbjct: 249 TFLYKSAFTKDMMGYASAIATVVLIITLALSLMQMK 284 >slr1202 [G] COG1175 ABC-type sugar transport systems, permease components Length = 298 Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 102/276 (36%), Positives = 158/276 (57%), Gaps = 4/276 (1%) Query: 11 LFIAPALLIYLLFFAGPIFSGLYYGFTDWNGFSFKAD-WVGLENFREAFRDPLLLTALKN 69 LF+ PAL++ P FT + KA WVGL NF +RD + ++ Sbjct: 18 LFLLPALVMLGATVFYPALQAFSLSFTQYELDLTKAPAWVGLANFERLWRDRVFWLTFRH 77 Query: 70 MAILSATVIVLQHSASILLAVLLDQKVKGIVWMRAVIFFPVILNTVVIGYVWSYMYAPMV 129 + V+ L + LA+L++QK++GI W R + PVI + VV G W +YA Sbjct: 78 TLLYLVGVVPLLIMLPLGLAILVNQKLRGITWFRMAYYTPVITSIVVAGIAWKALYASN- 136 Query: 130 GFLPKFFAAIGLEGLAGLDWLGDPGLAIYAIAFVMVWQYTGYSMMIYLAGLQSVSGEIYE 189 G L + A +G G+ WL P LA++++ V VW+ GY M+IYLAGLQ++ E+YE Sbjct: 137 GILNQILALLGFSD--GIPWLTSPNLALWSVMVVTVWKGLGYYMVIYLAGLQAIPQELYE 194 Query: 190 ASSIDGAGPWNKFWRVTLPLLIPSIIVNTVLSVIGCMKMFEHVFIMTQGGPANSTQTFGI 249 A +IDGA W + W +T+PL+ P + VLS I +K+FE V+IMTQGGP N+++T Sbjct: 195 AGAIDGADGWRQHWDITIPLMRPYCFLVGVLSSISALKVFEEVYIMTQGGPLNASKTVVY 254 Query: 250 MIYQYAFKTSQMGYGTAMAMILSVMILAVTFVQIKL 285 +Y+ AF+ +M Y +A+ ++L ++I + + +KL Sbjct: 255 YVYERAFQDLEMNYASAIGLVLFLVIFIFSVINLKL 290 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 165/283 (58%), Gaps = 14/283 (4%) Query: 11 LFIAPALLIYLLFFAGPIFSGLYYGFTDWNGFSFKADWVGLENFREAFRDPLLLTALKNM 70 +F+ P LL +L+F A PI L FTDW+ S + G EN++ F DP + +N Sbjct: 15 IFLLPNLLGFLIFIAIPILGSLGISFTDWDLVS-TIHFTGFENYKRLFNDPEFWKSFRN- 72 Query: 71 AILSATVIVLQHSASILL-----AVLLDQKVKGIVWMRAVIFFPVILNTVVIGYVWSYMY 125 ++ + S+++ A++L+QK+K + RAV F PVI + V + VW +++ Sbjct: 73 ----TITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVWKWLF 128 Query: 126 APMVGFLPKFFAAIGLEGLAGLDWLGDPGLAIYAIAFVMVWQYTGYSMMIYLAGLQSVSG 185 P G + F + IG+ AG +WL DP A+ A+ W+ G+ M+++L GLQ++S Sbjct: 129 NPSYGLINYFLSLIGI---AGPNWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNISP 185 Query: 186 EIYEASSIDGAGPWNKFWRVTLPLLIPSIIVNTVLSVIGCMKMFEHVFIMTQGGPANSTQ 245 YEA+++DGA + + +T+PLL P+ T++S+I ++F+ V IMT+GGP+ +T Sbjct: 186 SYYEAANMDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGATM 245 Query: 246 TFGIMIYQYAFKTSQMGYGTAMAMILSVMILAVTFVQIKLLSR 288 T IY +AF+ +MGY +AM+ IL ++I +T +Q KL R Sbjct: 246 TLVQNIYNHAFRYFEMGYASAMSWILFIVIFIITIIQNKLQKR 288 >TM0811 [G] COG1175 ABC-type sugar transport systems, permease components Length = 300 Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 103/281 (36%), Positives = 159/281 (56%), Gaps = 12/281 (4%) Query: 12 FIAPALLIYLLFFAGPIFSGLYYGFTDWNGFSFKADWVGLENFREAFRDPLLLTALKNMA 71 FI L+ +LF P+ G+ F ++ ++ ++GL+N+ + RDPL A KN Sbjct: 20 FITIPTLLMVLFIYYPLVFGIKISFYQYDIVG-ESLYIGLKNYVDLLRDPLFWNAFKNSL 78 Query: 72 ILSATVIVLQHSASILLAVLLDQKVKGIVWMRAVIFFPVILNTVVIGYVWSYMYAPMVGF 131 + V LQ SILLAVLLD+ ++G R +IF PV+ + W +MY Sbjct: 79 LYLLVVPPLQL-ISILLAVLLDRAIRGRNLFRTLIFLPVVTPITIAAITWQWMYRE---- 133 Query: 132 LPKFFAAIGLEGLAGLD----WLGDPGLAIYAIAFVMVWQYTGYSMMIYLAGLQSVSGEI 187 K F L+ L +D +L DP +A++AI FV +W+ GY M+IYLAGLQS+ E+ Sbjct: 134 --KGFINFLLQSLHIIDEPIAFLSDPKIALFAIMFVTMWKGFGYYMVIYLAGLQSIPREL 191 Query: 188 YEASSIDGAGPWNKFWRVTLPLLIPSIIVNTVLSVIGCMKMFEHVFIMTQGGPANSTQTF 247 EA+ +DGA P F++VT+PLL P I+ + +S I + +F ++ MT+GGP ++T+T Sbjct: 192 IEAARVDGAKPSQVFFKVTIPLLKPYILFCSTMSSIAALNVFGEIYAMTKGGPVHATETM 251 Query: 248 GIMIYQYAFKTSQMGYGTAMAMILSVMILAVTFVQIKLLSR 288 GI IY AF+ Q GY A A++ S +++A + + L Sbjct: 252 GIFIYNRAFEYLQFGYSNAAAVLFSFVVIAFSLLNFYLFRE 292 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.143 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,699,070 Number of extensions: 869189 Number of successful extensions: 3074 Number of sequences better than 1.0e-05: 191 Number of HSP's gapped: 2820 Number of HSP's successfully gapped: 193 Length of query: 293 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 187 Effective length of database: 26,153,027 Effective search space: 4890616049 Effective search space used: 4890616049 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)