BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0022.p (413 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1897 [G] COG1653 ABC-type sugar transport system, periplasmic ... 91 3e-18 BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic... 90 8e-18 SMa2305 [G] COG1653 ABC-type sugar transport system, periplasmic... 82 1e-15 PAE1324 [G] COG1653 ABC-type sugar transport system, periplasmic... 73 7e-13 VCA1033 [G] COG1653 ABC-type sugar transport system, periplasmic... 72 2e-12 >SP1897 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 419 Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/304 (24%), Positives = 132/304 (43%), Gaps = 26/304 (8%) Query: 48 QTVVDKFQEKYPYITIEHDKVYDQFREIIRTRIVSKSDMDMLWLFPNQVA--EFSKEDVL 105 + + F+++ P I ++ V + E+++TR+++ D++ ++P + E++K V Sbjct: 50 EEITRDFEKENPKIKVKVVNVPNA-GEVLKTRVLAGDVPDVVNIYPQSIELQEWAKAGVF 108 Query: 106 MDITGSPWLSNYLDAAVKLGTVDGKTYGVPYNSQPILMFYNKTLFDQLGLSIPANWEELM 165 D++ +L + + V+ K Y VP+ + ++YNK F++LGL +P W+E Sbjct: 109 EDLSNKDYLKRVKNGYAEKYAVNEKVYNVPFTANAYGIYYNKDKFEELGLKVPETWDEFE 168 Query: 166 AVSEKIKASGTAPMVIGSKDGWATQ------FITTSQFG-----LYQHENPDVFAQLASG 214 + + I A G P I D W F T + G ++ P+ Sbjct: 169 QLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEANQYLRYSQPNAI------ 222 Query: 215 DKKWTDPEFAGYFDGMKELSDKGYLLENSVGLSYDQVAQVFKEGKAAMWPMGEWGYSENF 274 K +DP M L G +N G Y V F G M P G W + Sbjct: 223 --KLSDPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFARGDVLMTPNGSWAITA-I 279 Query: 275 DADFSTFELGAFPIPVNRGDQPLVTNLVSDNLLVGVSW-SKHQEEIKLFMEFVAQPEMAK 333 + F++G F IP Q L + +L +S +KH +E F+E++ +PE+ + Sbjct: 280 NEQKPNFKIGTFMIPGKEKGQSLTVG--AGDLAWSISATTKHPKEANAFVEYMTRPEVMQ 337 Query: 334 IWSD 337 + D Sbjct: 338 KYYD 341 >BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 422 Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 82/332 (24%), Positives = 157/332 (47%), Gaps = 24/332 (7%) Query: 48 QTVVDKFQEKYPYITIEHDKVY-DQFREIIRTRIVSKSDMDMLWLFPNQVA-EFSKEDVL 105 + VV +F++ +P I I+ + V D +++ I+ + + S D+ + + ++ A +F + + Sbjct: 50 EEVVKEFEKDHPDIDIQIEAVLNDSYKDKIKVMLGTTSPPDIYFSWSDEFAFKFIRGNKA 109 Query: 106 MDITG-----SPWLSNYLDAAVKLGTVDGKTYGVPYNSQPILMFYNKTLFDQLGLSIPAN 160 +D++ + W S + + + T + K YGVP+ FYNK +F +L L P Sbjct: 110 LDLSSYYKNDTDWSSQLVQSQITPFTYENKQYGVPWQMDAKSFFYNKDIFQKLNLDPPKT 169 Query: 161 WEELMAVSEKIKASGTAPMVIGSKDGWA-TQFITTSQFGLYQHENPDVFAQLASGDKKWT 219 W+EL+ VS+K+K G P+ G+K W + +I T + + + +G+ +T Sbjct: 170 WDELIDVSKKLKEHGYTPISFGTKATWTISHYIGTLNQRMVDEKTREKDYNAKTGE--FT 227 Query: 220 DPEFAGYFDGMKELSDKGYLLENSVGLSYDQVAQVFKEGKAAMWPMGEWGYSENFDADF- 278 D + + ++EL Y ++ + ++ V Q FK GK+AM Y+E + Sbjct: 228 DEGYVKALEKLQELMP--YFNKHVNSVDHEYVRQQFKSGKSAMI------YAETAEIKLV 279 Query: 279 STFELGAFPIPVNRGDQPLVTNLVS--DNLLVGVSWSKHQEEIKLFMEFVAQPEMA-KIW 335 LG FP P G + L + ++ S +KH +E F++F+ M K+ Sbjct: 280 EPVNLGMFPFPEISGQKGSSEALTGAPEGFMIS-SRTKHPKEAMEFLQFLTSKRMGEKLV 338 Query: 336 SDETKQAVTVKDGTSESYNPL-AASLQPLIDA 366 D K + T E+ + ++Q ++DA Sbjct: 339 KDVGKYSAVQGTATEENATAIQREAVQHIVDA 370 >SMa2305 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 459 Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 15/228 (6%) Query: 69 YDQFREIIRTRIVSKSDMDMLWLFPNQVAEFSKEDVLMDITGSPWLSNYLD---AAVKLG 125 ++ + IR +V+ + W N++ F + DI+ Y D A Sbjct: 114 HEAHKTAIRNYLVAGAPDVCFWFSGNRMRAFVTRGLFDDISDLFEKEKYADVLGATAGSV 173 Query: 126 TVDGKTYGVPYNSQPILMFYNKTLFDQLGLSIPANWEELMAVSEKIKASGTAPMVIGSKD 185 TV+GK YG+P MFY K +FD+ GL +P +W++L+A EK K++ P+ +G+KD Sbjct: 174 TVEGKQYGLPTGGTLWGMFYRKDVFDEHGLKVPTSWDDLLAFGEKCKSASLTPVAMGTKD 233 Query: 186 -----GWATQFITTSQFGLYQHENPDVFAQLASGDKKWTDPEFAGYFDGMKELSDKGYLL 240 GW Q + GL +H FA L +G+ +TD F+ +EL +G+ Sbjct: 234 LWPAAGWFDQ-MNLRINGLDKH-----FA-LMNGEMAYTDETLKPVFEHWEELIKQGFFT 286 Query: 241 ENSVGLSYDQVAQVFKEGKAAMWPMGEWGYSENFDADFSTFELGAFPI 288 + + + + +A M +G + + D FP+ Sbjct: 287 PDHTSFGWQEAGAFLAQKRAGMMNLGAFVRAAFPRQDLPQLTFAPFPV 334 >PAE1324 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 437 Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 69/274 (25%), Positives = 127/274 (46%), Gaps = 33/274 (12%) Query: 38 LKLTTWNPIS-------QTVVDKFQEKYPYITIEH-DKVYDQFREIIRTRIVSK---SDM 86 +K+ W P S + V+D++Q+ P + E+ + ++ +I+ T++ +K +D+ Sbjct: 63 VKIRIWGPWSGAEYEYFKQVLDEYQKINPNVEFEYVTRRAEEIAQILPTQLEAKQAPADV 122 Query: 87 DMLWLFPNQVAEFSKEDVLMDITGSPWLSNYLDAAVKLGTVDGKTYGVPYNSQPILM--- 143 ++ F V E +K ++D+T + Y+ T +GK + P+ I++ Sbjct: 123 -VITSFGWFVVEMAKRGHVVDLTNVINPNEYVTGIFDPVTYEGKIWATPFT---IVLKPG 178 Query: 144 -FYNKTLFDQLGLSIPANWEELMAVSEKIKASGTAPMVIGSKDGWATQFITTSQFGLYQH 202 +Y K+ F Q GLS P W+E + + +++K G P+ G GW +T + + + Sbjct: 179 FWYRKSFFQQHGLSEPQTWDEFLQLLKRLKEIGVTPIASGDGVGWPLSDVTEA--FIIAY 236 Query: 203 ENPDVFAQLASGDKKWTDPEFAGYF-DGMKELSDKGYLLENSVGLSYDQVAQVFKEGKAA 261 PDVF L K+ DP F D + L +GY E + Q + + G Sbjct: 237 AGPDVFRGLTEKKVKFDDPRINAVFRDRISLLLREGYFGEPE---EWTQAVEKWWNGTYG 293 Query: 262 MWPMGEW--GYSENFDADFSTFELGAFPIPVNRG 293 ++ MG W G +N D ++G FP+P +G Sbjct: 294 IYFMGTWILGMVDNPD------DVGFFPMPETKG 321 >VCA1033 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 458 Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/331 (22%), Positives = 141/331 (42%), Gaps = 15/331 (4%) Query: 48 QTVVDKFQEKYPYITIEHDKVYD-QFREIIRTRIVSKSDMDMLWLFP--NQVAEFSKEDV 104 Q ++ F+ P I ++ + V + + + + + D++ P + +A F K Sbjct: 37 QKIIPAFEAANPGIKVKFNPVPNVNYTPTLWENLKAGKAGDLITCRPFDDSLALF-KAGH 95 Query: 105 LMDITGSPWLSNYLDAAVKLGTVD--GKTYGVPYNSQPILMFYNKTLFDQLGLSIPANWE 162 L +IT + N+ A D +T+ VP S FYNK +F++LGLS+P E Sbjct: 96 LAEITEMAGMENFPSFAQAPWQTDSGAQTFCVPMASVIHGFFYNKKIFNELGLSVPQTRE 155 Query: 163 ELMAVSEKIKASGT-APMVIGSKDGWATQFITTSQFGLYQHENPDVFAQLASGDKKWTDP 221 + V +K+KA G P+ + + W + G + D L +G + D Sbjct: 156 QFFTVLDKVKADGRYIPLSMSGSESWVASELGYQNIGPNYWKGEDGRLALINGQEHLDDS 215 Query: 222 EFAGYFDGMKELSDKGYLLENSVGLSYDQVAQVFKEGKAAMWPMGEWGYSENFD-ADFST 280 ++ F+ + + YL E+ Y ++F GKAA++ G W + D DF Sbjct: 216 QYVKVFEELARW--RAYLGEDGELRDYGTSNELFTSGKAALYVAGSWEIAPFTDKVDFGV 273 Query: 281 FELGAFPIPVNRGDQPLVTNLVSDNLLVGVSWSKHQEEIKLFMEFVAQPEMAKIWSDETK 340 P +GD T+ + + + SK+ + F++++ PE A+++++ Sbjct: 274 MR----PPVAKQGDGCFFTDHTDIGMGMNPA-SKNPQAAMAFLQWLTTPEFAELYTNSLP 328 Query: 341 QAVTVKDGTSESYNPLAASLQPLIDASEAQI 371 ++ + + NP A + D ++ I Sbjct: 329 GFFSLSNHFFDVTNPAAREMMEWRDQCDSTI 359 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 28,815,412 Number of extensions: 1249386 Number of successful extensions: 4066 Number of sequences better than 1.0e-05: 43 Number of HSP's gapped: 4058 Number of HSP's successfully gapped: 43 Length of query: 413 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 304 Effective length of database: 25,807,025 Effective search space: 7845335600 Effective search space used: 7845335600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 117 (49.7 bits)