BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0010.p (291 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1896 [G] COG1175 ABC-type sugar transport systems, permease co... 187 1e-47 BS_amyD [G] COG1175 ABC-type sugar transport systems, permease c... 159 7e-39 CAC3671 [G] COG1175 ABC-type sugar transport systems, permease c... 152 8e-37 BS_yurN [G] COG1175 ABC-type sugar transport systems, permease c... 136 3e-32 alr0738 [G] COG1175 ABC-type sugar transport systems, permease c... 135 1e-31 >SP1896 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 114/287 (39%), Positives = 167/287 (58%), Gaps = 4/287 (1%) Query: 3 KRRAAFYLMTIPALLLFFAFHTFPALQGIYYAFTNWDGYSNSFDYVGFKNFINIFKDENV 62 ++ A+ + IP LL F+ P QG +Y+FTNW G + ++ +VG NF +F D Sbjct: 14 QKYWAWAFVVIPLLLQAIFFYV-PMFQGAFYSFTNWTGLTYNYKFVGLNNFKLLFMDPKF 72 Query: 63 LNSYLFTFKYAIATTVLINIISLLIALGLNAKIKAKNFFRGVYFLPNILSVLIVGFIFNY 122 +N+ FT AIA V + + IA LN+KIK + FFR +F P +LS L V IF Sbjct: 73 MNAIGFTAIIAIAMVVGEIALGIFIARVLNSKIKGQTFFRAWFFFPAVLSGLTVALIFKQ 132 Query: 123 LFSNVFPVWGEKLGSDFLSQNILGNSDWAWIGIVIVAVWQGIAYNTILYLAGLQTIPHDL 182 +F+ P G L +F ++LG A V V +WQG+A I++LAGLQ+IP ++ Sbjct: 133 VFNYGLPAIGNALHIEFFQTSLLGTKWGAIFAAVFVLLWQGVAMPIIIFLAGLQSIPTEI 192 Query: 183 YEASNXXXXAAPSRWREFWSITFPLLASFFTINMVLAMKGGLMVFDQIIALTGGGPGRST 242 EA+ A S+ + FW+I P L ++ +LA+KGGL FDQ+ A+TGGGP +T Sbjct: 193 TEAAR--IDGATSK-QVFWNIELPYLLPSVSMVFILALKGGLTAFDQVFAMTGGGPNNAT 249 Query: 243 QSIALLIYTGGFQGGEFAYQSANAVIYFIVIVVISALQLKFLQKREM 289 S+ LL+Y F+ +F Y +A AVI F +IVVIS +QL+ +K E+ Sbjct: 250 TSLGLLVYNYAFKNNQFGYANAIAVILFFLIVVISIIQLRVSKKFEI 296 >BS_amyD [G] COG1175 ABC-type sugar transport systems, permease components Length = 303 Score = 159 bits (401), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 166/291 (57%), Gaps = 6/291 (2%) Query: 3 KRRAAFYLMTIPALLLFFAFHTFPALQGIYYAFTNWDGYSNSFDYVGFKNFINIFKDENV 62 K++++ + M IPALL F +P ++G FTNW+G+S + +VGF + +F D + Sbjct: 16 KKQSSLWWMYIPALLSVLVFMIYPFVKGTLITFTNWNGFSQVYQWVGFAQYERLFSDPDT 75 Query: 63 LNSYLFTFKYAIATTVLINIISLLIALGLNAKIKAKNFFRGVYFLPNILSVLIVGFIFNY 122 + T Y + +T N++ LL AL LN IK K R + +LP ++S LI+G+I+ + Sbjct: 76 WHILKNTLHYGLGSTFFQNVVGLLYALLLNQSIKTKAVTRTIVYLPVMISPLIMGYIWYF 135 Query: 123 LFSNVFPVWGEKLGSDFLSQ-NILGNSDW-AWIGIVIVAVWQGIAYNTILYLAGLQTIPH 180 FS + LG +S N L + WI IV++ +Q + ++YLAGLQ+IP Sbjct: 136 FFSYDGGALNDLLGVFGISPINALASPSLNPWI-IVMINTYQYVGIAMVVYLAGLQSIPK 194 Query: 181 DLYEASNXXXXAAPSRWREFWSITFPLLASFFTINMVLAMKGGLMVFDQIIALTGGGPGR 240 D YEA+ + ++F++IT PLL TIN+V+ + GGL +FD IIALT GGPG Sbjct: 195 DYYEAAQ---MDGAKQGQQFFTITLPLLMPSITINIVINIIGGLKLFDVIIALTAGGPGN 251 Query: 241 STQSIALLIYTGGFQGGEFAYQSANAVIYFIVIVVISALQLKFLQKREMDL 291 ++QS++ +Y F+ + Y + + VI++IS L + +++E ++ Sbjct: 252 ASQSMSTFMYDLYFKRQDAGYAATQGIFMAFVILIISFCALAYFKRKETEM 302 >CAC3671 [G] COG1175 ABC-type sugar transport systems, permease components Length = 297 Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 98/255 (38%), Positives = 138/255 (54%), Gaps = 5/255 (1%) Query: 10 LMTIPALLLFFAFHTFPALQGIYYAFTNWDGYSNSFDYVGFKNFINIFKDENVLNSYLFT 69 L +P +L+ F +P +QGI+ +FTNWDG S ++G KN+I +F D + S FT Sbjct: 21 LFVLPMAILYLIFFMYPLIQGIFISFTNWDGLSKVKRFIGLKNYIGLFNDNDFSKSISFT 80 Query: 70 FKYAIATTVLINIISLLIALGLNAKIKAKNFFRGVYFLPNILSVLIVGFIFNYLFSNVFP 129 + I V II L IA+ L KIK +FFR YF P +LS + V IF+ +F P Sbjct: 81 VELTIVLIVFEIIIGLGIAILLERKIKFNSFFRTAYFFPAVLSGMTVSLIFSQIFQYGIP 140 Query: 130 VWGEKLGSDFLSQNILGNSDWAWIGIVIVAVWQGIAYNTILYLAGLQTIPHDLYEASNXX 189 G + N L N A+I I V +WQG+A +L+LAGL ++P D+ EA++ Sbjct: 141 EVGNAFNINPFKLNPLSNHTGAFIAIAFVMLWQGVALPILLFLAGLMSVPRDIIEAAS-V 199 Query: 190 XXAAPSRWREFWSITFPLLASFFTINMVLAMKGGLMVFDQIIALTGGGPGRSTQSIALLI 249 A P + F+ I P L +I +LA+K GL+ FDQI+ALT G TQSI LL+ Sbjct: 200 DGATP--MQVFFKIKLPFLLPTLSIVFILALKSGLLAFDQIVALTYG--SVDTQSIGLLL 255 Query: 250 YTGGFQGGEFAYQSA 264 Y F Y ++ Sbjct: 256 YNDAVSSFRFGYANS 270 >BS_yurN [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 148/285 (51%), Gaps = 15/285 (5%) Query: 9 YLMTIPALLLFFAFHTFPALQGIYYAFTNWDGYSNSFDYVGFKNFINIFKDENVLNSYLF 68 YL +PAL+ F F P + ++ + W +S ++G KN++ +F D + Sbjct: 10 YLFLVPALV-FLLFVYIPIFENVFLSLFQWSSFSPEKTFIGLKNYVELFHDPVFYQALTN 68 Query: 69 TFKYAIATTVLINIISLLIALGLNAKIKAK--NFFRGVYFLPNILSVLIVGFIFNYLFSN 126 YA+ + V L++A L K+ K FFR V+FLP ++S+ ++ +F+++++ Sbjct: 69 NVLYAVISIVCQVFGGLILAAVLEDKLVRKWSPFFRTVFFLPVVISMTVIALLFDFIYN- 127 Query: 127 VFPVWG------EKLGSDFLSQNILGNSDWAWIGIVIVAVWQGIAYNTILYLAGLQTIPH 180 P G + +G D L++ LG+ A + ++ V+ WQ + Y +LY+ +Q IP Sbjct: 128 --PETGLLNQLLQAIGLDQLTRAWLGDDSTAMLSVIFVSQWQSVGYIAMLYIVSIQKIPD 185 Query: 181 DLYEASNXXXXAAPSRWREFWSITFPLLASFFTINMVLAMKGGLMVFDQIIALTGGGPGR 240 +LYEA+ + ++F+ IT P + +V+ + G VF++ LTGGGPG+ Sbjct: 186 ELYEAARL---DGAGKIQQFFHITVPQTKEMSFVAVVMTLTGAFTVFNEPYILTGGGPGK 242 Query: 241 STQSIALLIYTGGFQGGEFAYQSANAVIYFIVIVVISALQLKFLQ 285 +++ ++ +Y F Y SA A + I+ + +S +Q+KF + Sbjct: 243 ASEVLSTFLYKSAFTKDMMGYASAIATVVLIITLALSLMQMKFFK 287 >alr0738 [G] COG1175 ABC-type sugar transport systems, permease components Length = 359 Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 16/269 (5%), Positives = 43/269 (15%), Gaps = 18/269 (6%) Query: 25 FPALQGIYYAFTNWDGYSNSFDYVGFKNFINIFKDENVLNSYLFTFKYAIATTVLINIIS 84 A +++F + + + L + I+ Sbjct: 35 ANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQH 94 Query: 85 LLIALGLNAKIKAKNFFRGVYFLPNILSVLIVGFIFNYLFSN------------VFPVWG 132 A+ ++ A + + + Sbjct: 95 FHTAVHNEEQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVR--- 151 Query: 133 EKLGSDFLSQNILGNSDWAWIGIVIVAVWQGIAYNTILYLAGLQTIPHDLYEASNXXXXA 192 + + A + + +A I + Sbjct: 152 QPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPG 211 Query: 193 APSRWREFWSITFPLLASFFTINMVLAMKGGLMVFDQIIALTGGGPGRSTQSIALLIYTG 252 S + ++ + T G Sbjct: 212 IILY---GVSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLG 268 Query: 253 GFQGGEFAYQSANAVIYFIVIVVISALQL 281 G A V+V + + Sbjct: 269 VVAMGYGDGYPRAAPSGTPVLVNGREVPI 297 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.144 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,604,377 Number of extensions: 874778 Number of successful extensions: 4146 Number of sequences better than 1.0e-05: 155 Number of HSP's gapped: 3812 Number of HSP's successfully gapped: 156 Length of query: 291 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 186 Effective length of database: 26,268,361 Effective search space: 4885915146 Effective search space used: 4885915146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)