BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0009.p (273 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1895 [G] COG0395 ABC-type sugar transport system, permease com... 197 1e-50 CAC3670 [G] COG0395 ABC-type sugar transport system, permease co... 166 5e-41 Cgl2406 [G] COG0395 ABC-type sugar transport system, permease co... 158 1e-38 MYPU_1000 [G] COG0395 ABC-type sugar transport system, permease ... 136 5e-32 BS_amyC [G] COG0395 ABC-type sugar transport system, permease co... 133 4e-31 >SP1895 [G] COG0395 ABC-type sugar transport system, permease component Length = 278 Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 110/266 (41%), Positives = 177/266 (66%), Gaps = 6/266 (2%) Query: 12 VIIALCSLLILFPLYMTIAIALKNPEEMARSIFSLPTGLHFENFANAIKATNFFNALGNS 71 +++ L S+LIL PL T+ + K +++ + F PT ++NF+ + A NS Sbjct: 15 ILLILGSVLILVPLLATLFSSFKPTKDIVDNFFGFPTNFTWDNFSRLL-ADGIGGYYWNS 73 Query: 72 ATITVTAVIFILLTNSMVAYAIARNMNKR-FFKTLYFYFISAMFIPFQIIMLPVVKVTTD 130 ITV +++ +++ M AY+IARNM+KR F +Y I +F+PFQ+IM+P+ + + Sbjct: 74 VVITVLSLLAVMIFIPMAAYSIARNMSKRKAFTIMYTLLILGIFVPFQVIMIPITVMMSK 133 Query: 131 LHMNNIPGLIILYIVYGLAFNVFVYVGYIR-SIPYELEEAATVDGASTWGTFWRIIFPLL 189 L + N GLI+LY+ Y + +F+YVGYI+ SIP L+EAA +DGA+ + T++RIIFP++ Sbjct: 134 LGLANTFGLILLYLTYAIPQTLFLYVGYIKISIPESLDEAAEIDGANQFTTYFRIIFPMM 193 Query: 190 APVNATIGILSCLSTWNDFMLPLILLGNQDS--YTLPLVQYVFQGQFSTDFNLAFASYLL 247 P++AT I++ L WNDFMLPL++L N+DS +TLPL QY + GQ+ D+ +FASY++ Sbjct: 194 KPMHATTMIINALWFWNDFMLPLLVL-NRDSKMWTLPLFQYNYAGQYFNDYGPSFASYVV 252 Query: 248 ALSPMLIIYLFAQKWIIGGLTQGSIK 273 + + I+YLF Q+ II G++ G++K Sbjct: 253 GIISITIVYLFFQRHIISGMSNGAVK 278 >CAC3670 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 105/274 (38%), Positives = 165/274 (60%), Gaps = 4/274 (1%) Query: 3 KKTTNWPVTVIIALCSLLILF-PLYMTIAIALKNPEEMARSIFSLPTGLHFENFANAIKA 61 K N +++AL ++ +F P+Y+T+ + K + FS P EN+ Sbjct: 9 KSKANILTYIVLALGAVFFIFLPIYLTLIGSFKTGADTIADFFSFPRSFFSENYITVFN- 67 Query: 62 TNFFNALGNSATITVTAVIFILLTNSMVAYAIARNMNKRFFKTLYFYFISAMFIPFQIIM 121 + FF N+ ITV +VI ILL + +YAI R+ N + FKT+Y + + +F+PFQ+ M Sbjct: 68 SGFFGYFLNTIEITVFSVILILLIVPLGSYAIVRSKNSKLFKTIYMFCLLGLFVPFQVFM 127 Query: 122 LPVVKVTTDLHMNNIPGLIILYIVYGLAFNVFVYVGYIRS-IPYELEEAATVDGASTWGT 180 LP+ V LH N GL+ +Y + +F+Y+GY+++ +P ELEEAA++DG T Sbjct: 128 LPLTTVAAHLHAMNKIGLMFIYASLSIPQTMFLYIGYMKANLPLELEEAASIDGCGRLKT 187 Query: 181 FWRIIFPLLAPVNATIGILSCLSTWNDFMLP-LILLGNQDSYTLPLVQYVFQGQFSTDFN 239 + +I+FPLL P+NATI IL+ L WNDF+LP LIL G+ ++TL L QY + ++ Sbjct: 188 YLKIVFPLLKPINATIIILNALWIWNDFLLPFLILGGDNGNWTLTLFQYNYVAANQMNYG 247 Query: 240 LAFASYLLALSPMLIIYLFAQKWIIGGLTQGSIK 273 FA Y+ ++ P++I+Y+ Q+ IIGG+ +GSIK Sbjct: 248 PMFALYISSIVPIIIVYIIFQRRIIGGMVEGSIK 281 >Cgl2406 [G] COG0395 ABC-type sugar transport system, permease component Length = 304 Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/269 (34%), Positives = 156/269 (57%), Gaps = 6/269 (2%) Query: 10 VTVIIALCSLLILFPLYMTIAIALKNPEEMARSIFSLPTG---LHFENFANAIKATNFFN 66 V I+A +++ L P+ + K+ ++ FSLP G + FENF + F Sbjct: 36 VYAILAFFTIVFLGPILFIFINSFKSKFAISSDPFSLPIGETWVGFENFMVGLTKQGFLE 95 Query: 67 ALGNSATITVTAVIFILLTNSMVAYAIARNMNKRFFKTLYFYFISAMFIPFQIIMLPVVK 126 A S IT+ +VI I+ ++M AY I R + + LY+ F+ +M IPFQ++M P VK Sbjct: 96 ATLWSFIITILSVIVIVFFSAMTAYYITR-VKTWWTNLLYYLFVVSMIIPFQMVMFPTVK 154 Query: 127 VTTDLHMNNIPGLIILYIVYGLAFNVFVYVGYIRSIPYELEEAATVDGASTWGTFWRIIF 186 + LH+NN G+++LY+ +G +VF++ G+++SIP ++EEAA +DG ++R+++ Sbjct: 155 IADMLHLNNPIGIVVLYLGFGSGLSVFMFAGFVKSIPLDVEEAAMIDGCGPLQNYFRVVW 214 Query: 187 PLLAPVNATIGILSCLSTWNDFMLPLILLGNQDSY-TLPLVQYVFQGQ-FSTDFNLAFAS 244 P+L P T+ IL+ + WND++LP +++G Y T+P+V F G + D A Sbjct: 215 PMLKPTAITVAILNAMWVWNDYLLPYLVIGLSTRYKTIPVVIQSFVGSNGNRDTGAMMAM 274 Query: 245 YLLALSPMLIIYLFAQKWIIGGLTQGSIK 273 +LA+ P++I Y Q+ II G+ G++K Sbjct: 275 LVLAIIPIVIFYFSTQRHIIEGVAAGAVK 303 >MYPU_1000 [G] COG0395 ABC-type sugar transport system, permease component Length = 288 Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 87/257 (33%), Positives = 148/257 (57%), Gaps = 7/257 (2%) Query: 22 LFPLYMTIAIALKNPEEM-ARSIFSLPTGLHFENFANAIKATNFFNALGNSATITVTAVI 80 LFP ++ + KN E+ ++IF+LP+ N+ A +A NF + S +T+ + I Sbjct: 34 LFPYFLMTNTSFKNITELITKNIFALPSKYEGPNYQRAFQALNFAESFSVSLLVTIVSNI 93 Query: 81 FILLTNSMVAYAIARNMNKRFFKTLYFY-FISAMFIPFQIIMLPVVKVTTDLHMNNIPGL 139 I+ +S+ A+ +AR+ KR + FY F+ + +PFQ IMLP++ + + N+ GL Sbjct: 94 SIIFFSSITAWQLARS--KRLISKIIFYMFLITIIVPFQAIMLPLIYLMGKMKFLNLFGL 151 Query: 140 IILYIVYGLAFNVFVYVGYIRSIPYELEEAATVDGASTWGTFWRIIFPLLAPVNATIGIL 199 I +Y +G+ ++F+ G++ +IP LEE + V+G +++II PLL P+ AT+ I+ Sbjct: 152 IFMYTGFGMPISIFMMHGFLSNIPLSLEEVSKVEGYRPIRVYFKIILPLLKPIIATVAII 211 Query: 200 SCLSTWNDFMLP-LILLGNQDSYTLPLV--QYVFQGQFSTDFNLAFASYLLALSPMLIIY 256 + + WNDF+LP L+ L N S T ++ Q G + TDF A + + P++I + Sbjct: 212 NTIWIWNDFLLPYLVYLSNSHSPTTTIIRLQEGLVGTYGTDFTAIMAGLTILIIPIVIFF 271 Query: 257 LFAQKWIIGGLTQGSIK 273 + QK II G+T G+IK Sbjct: 272 IVMQKNIISGITNGAIK 288 >BS_amyC [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 87/266 (32%), Positives = 147/266 (55%), Gaps = 4/266 (1%) Query: 10 VTVIIALCSLLILFPLYMTIAIALKNPEEMARSIFSLPTGLHFENFANAIKATNFFNALG 69 +T++ A+ + P Y+ + +LK + + S + P + F NF+ A + + N+ Sbjct: 12 ITLLAAIVACAHFIPFYILLTTSLKAKGDYS-SKWIFPADISFHNFSEAWERASLGNSFI 70 Query: 70 NSATITVTAVIFILLTNSMVAYAIARNMNKRFFKTLYFYFISAMFIPFQIIMLPVVKVTT 129 N+ IT + + +++ S+ AY +AR K K ++ IS M IP M+P+ ++ Sbjct: 71 NTMIITGFSALLLIIFGSLAAYPLARRETK-LNKAVFALLISIMIIPPLTSMVPLYRMVV 129 Query: 130 DLHMNNIPGL-IILYIVYGLAFNVFVYVGYIRS-IPYELEEAATVDGASTWGTFWRIIFP 187 D M N + I + + VF+Y G+IRS IP EL EAA +DGA F+ I+FP Sbjct: 130 DAGMVNTHAIAIFINTAAYMPLTVFLYSGFIRSTIPKELVEAARIDGAGMLKIFFTIVFP 189 Query: 188 LLAPVNATIGILSCLSTWNDFMLPLILLGNQDSYTLPLVQYVFQGQFSTDFNLAFASYLL 247 LL P+ ATI I+SC+ WND+ + L +Q TL + F G+ + + +L A+ L+ Sbjct: 190 LLKPITATICIISCVFIWNDYQFAIFFLQDQKVQTLTVAMAGFFGENANNLHLVAAAALM 249 Query: 248 ALSPMLIIYLFAQKWIIGGLTQGSIK 273 A+ PM++++L QK+ I GL+ G++K Sbjct: 250 AMLPMVVLFLALQKYFIAGLSSGAVK 275 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.142 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,490,209 Number of extensions: 685282 Number of successful extensions: 2948 Number of sequences better than 1.0e-05: 212 Number of HSP's gapped: 2771 Number of HSP's successfully gapped: 213 Length of query: 273 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 168 Effective length of database: 26,268,361 Effective search space: 4413084648 Effective search space used: 4413084648 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)