BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0039.p (198 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_qoxC [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, ... 202 3e-52 BH2066 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, s... 189 3e-48 BS_ctaE [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, ... 150 9e-37 PA1319 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, s... 147 1e-35 RSc2915 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, ... 147 1e-35 >BS_qoxC [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Length = 204 Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 103/194 (53%), Positives = 132/194 (68%) Query: 4 DASKPLEYSTEENSNKIFGFWVFLGAEIPLFATLFTVYFVMVDRFASGPSGSELFEIGPV 63 +++ P+EY +E I GFW+FLGAEI LF+TLF +FV+ +R A G ELFE+ V Sbjct: 8 NSNAPMEYQSETGRLNILGFWIFLGAEIVLFSTLFATFFVLKNRTAGGVLPDELFEVNLV 67 Query: 64 LIETFLLLTSSFTIGLAVHAMRLGYKKAMMVLMAITLLMGLGFIGIEIDEFFTYVHEGAT 123 +I TFLLL SSFT G+AVH MR G K +++ ITLL+G GF+G EI+EF YVHEGA Sbjct: 68 MIMTFLLLISSFTCGIAVHEMRRGSLKGVVIWTIITLLLGAGFVGCEINEFVHYVHEGAA 127 Query: 124 LQTXXXXXXXXXXXXTHGAHVSFGFLWGTAIMIQVWRQGINPATANKAFIFSLFWHFLDV 183 L T THG HV+ G W T I+IQ+ ++G+ P T++K FI SL+WHFLDV Sbjct: 128 LSTSAFWSGFFVLLGTHGTHVTIGIFWITGILIQLKKRGLTPQTSSKIFISSLYWHFLDV 187 Query: 184 VWIFIFSFVYLKGL 197 VWIFIF+ VYL GL Sbjct: 188 VWIFIFTGVYLMGL 201 >BH2066 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Length = 204 Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 105/195 (53%), Positives = 130/195 (66%) Query: 3 IDASKPLEYSTEENSNKIFGFWVFLGAEIPLFATLFTVYFVMVDRFASGPSGSELFEIGP 62 I+ ++PLEY + E N I GFW+FLGAE LFATLF YFV+VDR A ++LF++ Sbjct: 7 INPNQPLEYQSAEGRNNILGFWIFLGAEFALFATLFASYFVLVDRNADAVRAADLFDLNL 66 Query: 63 VLIETFLLLTSSFTIGLAVHAMRLGYKKAMMVLMAITLLMGLGFIGIEIDEFFTYVHEGA 122 VLI TFLLLTSSFT GLA+H MR G M V + +TLL+GLGF+G EI EF Y HEGA Sbjct: 67 VLIMTFLLLTSSFTCGLAIHEMRAGRMNRMFVWIGLTLLLGLGFVGFEIYEFVHYAHEGA 126 Query: 123 TLQTXXXXXXXXXXXXTHGAHVSFGFLWGTAIMIQVWRQGINPATANKAFIFSLFWHFLD 182 TL THG HVS G W ++IQ+ ++G+ P T +K FI SL+WHFLD Sbjct: 127 TLSASAHWSAFFLLLGTHGLHVSIGIGWIVLLVIQMKKRGLTPRTTSKFFIASLYWHFLD 186 Query: 183 VVWIFIFSFVYLKGL 197 VVWI IF+ VYL G+ Sbjct: 187 VVWIMIFTGVYLLGM 201 >BS_ctaE [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Length = 207 Score = 150 bits (380), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 82/190 (43%), Positives = 118/190 (62%), Gaps = 1/190 (0%) Query: 10 EYSTEENSNKIFGFWVFLGAEIPLFATLFTVYFVMVDRFASGPSGSELFEIGPVLIETFL 69 E T E NK GFW+FLG E LFA+LF + + + A P +E+F++ V I T L Sbjct: 17 EKVTLEGKNKFLGFWLFLGGETVLFASLFATFLALRNSNAGDPPTTEMFDVTLVFIATML 76 Query: 70 LLTSSFTIGLAVHAMRLGYKKAMMVLMAITLLMGLGFIGIEIDEFFTYVHE-GATLQTXX 128 LLTSS T A++ M+ M + + IT+L+G GF+G+EI EF Y HE G T+ + Sbjct: 77 LLTSSLTSVYAMYHMKNFSFGKMQLWLGITILLGAGFLGLEIYEFKHYTHEFGFTITSSA 136 Query: 129 XXXXXXXXXXTHGAHVSFGFLWGTAIMIQVWRQGINPATANKAFIFSLFWHFLDVVWIFI 188 THGAHV+FG +W + +MI+ ++G+N TA K ++ SL+WHF+DVVW+FI Sbjct: 137 LGSAFYTLVGTHGAHVAFGLMWISTLMIRNAKRGLNLYTAPKFYVASLYWHFIDVVWVFI 196 Query: 189 FSFVYLKGLM 198 F+ VYL G++ Sbjct: 197 FTVVYLMGMV 206 >PA1319 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Length = 209 Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 74/187 (39%), Positives = 107/187 (57%) Query: 10 EYSTEENSNKIFGFWVFLGAEIPLFATLFTVYFVMVDRFASGPSGSELFEIGPVLIETFL 69 +++ + N +FGFW++L + LFA++F Y V+V A GPSG ++FE+ VL+ET + Sbjct: 21 DHAHDSGGNTVFGFWLYLMTDCVLFASVFATYAVLVHHTAGGPSGKDIFELPYVLVETAI 80 Query: 70 LLTSSFTIGLAVHAMRLGYKKAMMVLMAITLLMGLGFIGIEIDEFFTYVHEGATLQTXXX 129 LL SS T GLA+ + G K + + +T L+G FIG+EI+EF + EG Sbjct: 81 LLVSSCTYGLAMLSAHKGAKGQAIAWLGVTFLLGAAFIGMEINEFHHLIAEGFGPSRSAF 140 Query: 130 XXXXXXXXXTHGAHVSFGFLWGTAIMIQVWRQGINPATANKAFIFSLFWHFLDVVWIFIF 189 HG HVS G LW +M Q+W +G+ + SLFWHFLD+VWI +F Sbjct: 141 LSSFFTLVGMHGLHVSAGLLWMLVLMAQIWTRGLTAQNNTRMMCLSLFWHFLDIVWICVF 200 Query: 190 SFVYLKG 196 + VYL G Sbjct: 201 TVVYLMG 207 >RSc2915 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Length = 211 Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/181 (41%), Positives = 109/181 (60%) Query: 18 NKIFGFWVFLGAEIPLFATLFTVYFVMVDRFASGPSGSELFEIGPVLIETFLLLTSSFTI 77 K+FGFWV+L +++ +FA+LF + V+ A GP G ELF++ VLIET +LL SS T Sbjct: 31 TKVFGFWVYLMSDLIIFASLFATFCVLRSATAGGPDGKELFDLSYVLIETGILLVSSITY 90 Query: 78 GLAVHAMRLGYKKAMMVLMAITLLMGLGFIGIEIDEFFTYVHEGATLQTXXXXXXXXXXX 137 G+ + ++ G K +M+ + IT L+G F+G+EI+EF + EGA Sbjct: 91 GMVMVGLQAGRKDQVMLWLGITFLLGAAFVGMEINEFHHLIAEGAGPSRSAFLSSFFTLV 150 Query: 138 XTHGAHVSFGFLWGTAIMIQVWRQGINPATANKAFIFSLFWHFLDVVWIFIFSFVYLKGL 197 THG HV+ G LW +M Q+ R+G+ + + SLFWHFLDVVWI +F+ VYL G Sbjct: 151 GTHGLHVASGLLWIAVLMWQISRKGLTTTNSTRLACLSLFWHFLDVVWIGVFTVVYLLGA 210 Query: 198 M 198 M Sbjct: 211 M 211 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.144 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,144,201 Number of extensions: 448235 Number of successful extensions: 10680 Number of sequences better than 1.0e-05: 32 Number of HSP's gapped: 10656 Number of HSP's successfully gapped: 32 Length of query: 198 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 97 Effective length of database: 26,729,697 Effective search space: 2592780609 Effective search space used: 2592780609 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 113 (48.1 bits)