BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0391.0035.p
         (231 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

aq_281 [K] COG1309 Transcriptional regulator                           68   1e-11
CAC0019 [K] COG1309 Transcriptional regulator                          60   2e-09
alr1941 [K] COG1309 Transcriptional regulator                          60   3e-09
BS_ydgC [K] COG1309 Transcriptional regulator                          54   1e-07
Rv0078 [K] COG1309 Transcriptional regulator                           54   2e-07

>aq_281 [K] COG1309 Transcriptional regulator
          Length = 179

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%)

Query: 42  SIRTREAIVQAAMKQFSDKGFHQTNTKQIAAAAGVSTGSFYSYFVDKRAVFIEVLKNYGT 101
           S++TRE I++AA K+F++KGF+ T    I  +AGV+ G+FY YF  K  VF E+LK    
Sbjct: 5   SVQTRERIIKAAAKEFAEKGFYNTQISHIVESAGVARGTFYIYFKSKEEVFEEILKKVVE 64

Query: 102 DLLARIDA 109
           DL  RI  
Sbjct: 65  DLKERIKP 72


>CAC0019 [K] COG1309 Transcriptional regulator
          Length = 201

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 97/207 (46%), Gaps = 17/207 (8%)

Query: 30  MEDKIRTPRQERSIRTREAIVQAAMKQFSDKGFHQTNTKQIAAAAGVSTGSFYSYFVDKR 89
           M+ ++R P+Q+RSI  ++ I+ AA       G++   T  IA AAG+STG+ Y+YF DK+
Sbjct: 1   MDKEVRKPQQKRSIEKKKRILDAANTLLLKNGYYDITTADIAKAAGLSTGTVYAYFKDKK 60

Query: 90  AVFIEVL----KNYGTDLLARIDASMSEINFLTIDRSELIMHLVDTLLISHEAFI-GYHR 144
            + +  L    K++    L  +D      N +       I +++   +  H ++   YH 
Sbjct: 61  DILLSSLYESSKSFREQTLNELDKISQNDNPVNT-----IKNVLQIFIKFHTSYPKKYHD 115

Query: 145 ELTIMYHSDEEIKQLMDAQYEAGRIRTLEYLQMGQDELKTEDMEAASVIVFETVSAIVDV 204
           EL  + + DE+++   +          +++L+     LK E  +  S +++  +  I D 
Sbjct: 116 ELMSLSYIDEDVRGFFENIKNTMMDAVVKHLKKCGINLKHE--KEQSFLIYSLIENIEDE 173

Query: 205 ISFS-----QQRIATERLKSELVHMIV 226
           + F       + I  +     +V+MI+
Sbjct: 174 LVFDIYPDLNKNILIDECARVIVNMIM 200


>alr1941 [K] COG1309 Transcriptional regulator
          Length = 359

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 2/72 (2%), Positives = 8/72 (11%)

Query: 44  RTREAIVQAAMKQFSDKGFHQTNTKQIAAAAGVSTGSFYSYFVDKRAVFIEVLKNYGTDL 103
                     +   S                  +     +       +   +    G   
Sbjct: 13  LRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGIT 72

Query: 104 LARIDASMSEIN 115
              +        
Sbjct: 73  KPVLLLEGFFDA 84


>BS_ydgC [K] COG1309 Transcriptional regulator
          Length = 111

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 0/122 (0%), Positives = 0/122 (0%), Gaps = 5/122 (4%)

Query: 39  QERSIRTREAIVQAAMKQFSDKGFHQTNTKQIAAAAGVSTGSFYSYFVDKRAVFIEVLKN 98
                    A+V   +   +    +                 +              +  
Sbjct: 2   GLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIF 61

Query: 99  YGTDLLARIDASMSEINFLTIDRSELIMHLVDTLLISHEAFIGYHRELT-IMYHSDEEIK 157
               ++      +S   F  + R                    +   +            
Sbjct: 62  SMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACW----GISAWVLIICW           117

Query: 158 QL 159
             
Sbjct: 118    119


>Rv0078 [K] COG1309 Transcriptional regulator
          Length = 201

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 30 MEDKIRTPRQERSIRTREAIVQAAMKQFSDKGFHQTNTKQIAAAAGVSTGSFYSYFVDKR 89
          ME K RT ++ERS  TREA++  A K +  +G+ +  T +IA  AGV+ G+ Y  F DK 
Sbjct: 1  MEIKRRT-QEERSAATREALITGARKLWGLRGYAEVGTPEIATEAGVTRGAMYHQFADKA 59

Query: 90 AVF 92
          A+F
Sbjct: 60 ALF 62


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.131    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,169,412
Number of extensions: 496074
Number of successful extensions: 1182
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 1185
Number of HSP's successfully gapped: 20
Length of query: 231
Length of database: 38,378,431
Length adjustment: 103
Effective length of query: 128
Effective length of database: 26,499,029
Effective search space: 3391875712
Effective search space used: 3391875712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)