BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0391.0034.p
         (329 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0020_1 [GEPR] COG0477 Permeases of the major facilitator supe...    64   3e-10

>CAC0020_1 [GEPR] COG0477 Permeases of the major facilitator superfamily
          Length = 458

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 1/180 (0%)

Query: 3   LLLFILTQWKGKEPMLPLSLMRIRTFNSASLTLLIVGAALMNLSLLTSFFLTRMMGMTEL 62
           L+LFI+ + K   PM+ ++L +  TF ++S+  +I G  LM   L+ +++L  ++    L
Sbjct: 238 LILFIIIELKVSSPMIEINLFKEPTFTASSICYMITGFGLMCPLLILNYYLQNVLQYDTL 297

Query: 63  KAGLVLSMXXXXXXXXXXXXXPLSAKYGSHLFAAAGIVVTGGAMYSMSGLHADSXXXXXX 122
           +A  ++                L  K    +    G++  G  ++ +S L          
Sbjct: 298 EAAFIMMSVSLTGMFSTPIGSILGKKVSPRIINFIGMLSLGIGIFRLSYLSYGMSKGTMI 357

Query: 123 XXXXXXXXXXXXTMAPVMSSAVRNVPEDKVGISSGVTNMAKSLGSVIGVAIIVTVLQHNM 182
                       ++   +SS+V+ +P++K GI SG+ N A+ +GS IG+AI+V++L  N+
Sbjct: 358 FDLIICGIGLGFSVQA-LSSSVKFIPKEKSGIGSGIVNAARQIGSCIGIAILVSMLNSNV 416


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.132    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 16,284,568
Number of extensions: 527323
Number of successful extensions: 1161
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1170
Number of HSP's successfully gapped: 7
Length of query: 329
Length of database: 38,378,431
Length adjustment: 107
Effective length of query: 222
Effective length of database: 26,037,693
Effective search space: 5780367846
Effective search space used: 5780367846
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)