BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0391.0025.p
         (185 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF0406 [J] COG1859 RNA:NAD 2'-phosphotransferase                      103   1e-22
AF1553 [J] COG1859 RNA:NAD 2'-phosphotransferase                       82   3e-16

>AF0406 [J] COG1859 RNA:NAD 2'-phosphotransferase
          Length = 216

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 100/173 (57%), Gaps = 5/173 (2%)

Query: 9   SLSKFMTKLLRHTPAEYGLLLDPEDGSCLLEDLERVIHTAPKWAGITEEDIRQVVRNSEK 68
            L KF++ +LRH P ++GL +D E+G   LE L RV+    KWA I    I+ +V + EK
Sbjct: 35  KLGKFISGVLRHFPDKFGLNMD-ENGWVNLESLARVVKRRYKWANIWL--IKALVYSDEK 91

Query: 69  QRFAIEGDRIKARYGHS-HARLTYEPGIPPKVLYHGTHQAALPAILKEGLLPMGRQYIHL 127
           QR+ ++GD+I+ARYGHS   +L+  P     VLY+GT +     +L+ G+ P+ ++Y+HL
Sbjct: 92  QRYELKGDKIRARYGHSIDVKLSDFPEAKEDVLYYGTSEEEAHRMLEIGIKPVNQRYVHL 151

Query: 128 SEGLHFAS-LAGSRRGKLILLTVDTVKAVHLGVTFYYAGNEVWLSEPIPPACI 179
           S  +  +  +A  R    I+L +D  KA   G+    A + + L+E IP   I
Sbjct: 152 STTIEKSKEVASIRTDTPIVLEIDAKKAREDGIRIIKANDLIALAEEIPAKYI 204


>AF1553 [J] COG1859 RNA:NAD 2'-phosphotransferase
          Length = 216

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 8/184 (4%)

Query: 1   MLNHAAEVSLSKFMTKLLRHTPAEYGLLLDPEDGSCLLEDLERVIHTAPKWAGITEEDIR 60
           +L       +SKF++ LLRH   ++G+ LD EDG   L D+ +++       G+  + + 
Sbjct: 24  LLKSEDRKKVSKFLSGLLRHFGRDFGVRLD-EDGWAELRDVLKILSER---YGVGRKHVE 79

Query: 61  QVVRNSEKQRFAIEGDRIKARYGHS-HARLTY-EPGIPPKVLYHGTHQAALPAILKEGLL 118
            +V+   K RF ++  RI+A+YGHS   R  + E G  P+ LYH T    L +ILK GLL
Sbjct: 80  LIVKFDPKGRFELKNGRIRAKYGHSVEVRTDWSEGGEIPEKLYHATSPENLNSILKTGLL 139

Query: 119 PMGRQYIHLSEGLHFASLAGSR-RGKLILLTVDTVKAVHLGVTFYYAGNEVWLSEPIPPA 177
           PM R+ +H+      A   G R     +LL +D    +  G+     G +V+  + +PP 
Sbjct: 140 PMRRREVHMCSSPQEAIEVGKRHSSNPVLLEIDAKGLMQDGIEVRRKG-KVYTVDFVPPK 198

Query: 178 CIAM 181
            I +
Sbjct: 199 FIRV 202


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,190,448
Number of extensions: 540115
Number of successful extensions: 5606
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5601
Number of HSP's successfully gapped: 2
Length of query: 185
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 85
Effective length of database: 26,845,031
Effective search space: 2281827635
Effective search space used: 2281827635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)