BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0023.p (324 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_tagO [M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotran... 188 9e-48 lin0958 [M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotran... 177 2e-44 lin2663 [M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotran... 176 4e-44 CAC2875 [M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotran... 166 4e-41 SA0702 [M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotrans... 162 1e-39 >BS_tagO [M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase Length = 187 Score = 188 bits (478), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 0/299 (0%), Positives = 0/299 (0%), Gaps = 9/299 (3%) Query: 9 VLAFLVSFCIVYLLIPPLGRLAFRLDFVDKPRKDVERKIHREPIPLTASYAIFIGFFITY 68 ++ + + + F + ++ + + +Y F Sbjct: 10 DPLYIAYHDNEWGVPETDSKKLFEMICLEGQQ---AGLSWITVLKKRENYRACFHQFDPV 66 Query: 69 LLFTRDFSLGTLALFIGGVLLLTIGTIDDWYKTKGKDFPALPKFIVQIAAAILVFLSGNA 128 + + G++ + + + S Sbjct: 67 KVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAY-----LQMEQNGEPFVDFVWSFVN 121 Query: 129 FTGFFNPFSGDYISLPVILQFVLTILWIFGVTTVINFSDGMDGLAGGLTAISAMTLFVVA 188 + + + + + Sbjct: 122 HQPQVTQATTLSEIPT-STSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGCC 180 Query: 189 LAKGQSASAMMAITLVGVTIAYLRYNKAPAKIFMGDAGATFLGYILAVIALDGAFKQATV 248 Sbjct: 181 240 Query: 249 LSLFIPILALGVPIFDNLFVVIKRFVQGKSIYQADATQVHYRLLKAGLNQKQVVAVLYL 307 Sbjct: 241 299 >lin0958 [M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase Length = 533 Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 15/298 (5%), Positives = 48/298 (16%), Gaps = 21/298 (7%) Query: 14 VSFCIVYLLIPPLGRLAFRLDFVDKPRKDVERKIHREPIPLTASYAIFIGFFITYLLFTR 73 + + L++ + ++ R + + + + +L Sbjct: 8 STTLFLILILCGILQIGSNGMSFWAFR---DDLQRLNQVEQSNQQRAALAQTRAVMLQAS 64 Query: 74 DFSLGTLALFIGGVLLLTIGTIDDWYKTKGKDFPALPKFIVQIAAAILVFLSGNAFTGFF 133 +L + + + + G Sbjct: 65 TALN-KAGTLTALSYPADDIKTLMTT-----ARASLTQSTTLFKSFMAMTAGNEHVRGLQ 118 Query: 134 N-PFSGDY----ISLPVILQFVLTILWIFGVTTVINFSDGMDGLAGGLTAISAMTLFVVA 188 + + A L + Sbjct: 119 KETEKSFARWHNDLEH------QATWLESNQLSDFLTAPVQGSQNAFDVNFEAWQLEINH 172 Query: 189 LAKGQSASAMMAITLVGVTIAYLRYNKAPAKIFMGDAGATFLGYILAVIALDGAFKQATV 248 + + SA + + + + A + LA+I A Sbjct: 173 VLEAASAQSQRNYQISALVFISMIIVAAIYISSALWWTRKMIVQPLAIIGSHF-DSIAAG 231 Query: 249 LSLFIPILALGVPIFDNLFVVIKRFVQGKSIYQADATQVHYRLLKAGLNQKQVVAVLY 306 + I + + + + Sbjct: 232 NLARPIAVYGRNEITAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSS 289 >lin2663 [M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase Length = 533 Score = 176 bits (447), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 14/303 (4%), Positives = 47/303 (15%), Gaps = 21/303 (6%) Query: 9 VLAFLVSFCIVYLLIPPLGRLAFRLDFVDKPRKDVERKIHREPIPLTASYAIFIGFFITY 68 + + + L++ + ++ R + + + + Sbjct: 3 NRIRISTTLFLILILCGILQIGSNGMSFWAFR---DDLQRLNQVEQSNQQRAALAQTRAV 59 Query: 69 LLFTRDFSLGTLALFIGGVLLLTIGTIDDWYKTKGKDFPALPKFIVQIAAAILVFLSGNA 128 +L + + + + Sbjct: 60 MLQASTAL-NKAGTLTALSYPADDIKTLMTTARASL-----TQSTTLFKSFMAMTAGNEH 113 Query: 129 FTGFFN-PFSGD----YISLPVILQFVLTILWIFGVTTVINFSDGMDGLAGGLTAISAMT 183 G + + A Sbjct: 114 VRGLQKETEKSFARWHNDLEH------QATWLESNQLSDFLTAPVQGSQNAFDVNFEAWQ 167 Query: 184 LFVVALAKGQSASAMMAITLVGVTIAYLRYNKAPAKIFMGDAGATFLGYILAVIALDGAF 243 L + + + SA + + + + A + LA+I Sbjct: 168 LEINHVLEAASAQSQRNYQISALVFISMIIVAAIYISSALWWTRKMIVQPLAIIGSHF-D 226 Query: 244 KQATVLSLFIPILALGVPIFDNLFVVIKRFVQGKSIYQADATQVHYRLLKAGLNQKQVVA 303 A + I + + + Sbjct: 227 SIAAGNLARPIAVYGRNEITAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNND 286 Query: 304 VLY 306 + Sbjct: 287 LSS 289 >CAC2875 [M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase Length = 533 Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 24/302 (7%), Positives = 61/302 (20%), Gaps = 11/302 (3%) Query: 12 FLVSFCIVYLLIPPLGRLAFRLDFVDKPRKDVERKIHREPIPLTASYAIFIGFFITYLLF 71 F I+ L + + +R E + + Sbjct: 8 STTLFLILILCGILQIGSNGMSFWAFRDDL--QRLNQVEQSNQQRAALAQTRAVMLQAST 65 Query: 72 TRDFSLGTLALFIGGVLLLTIGTIDDWYKTKGKDFPALPKFIVQIAAAILVFLSGNAFTG 131 + + AL + T+ T + F +A Sbjct: 66 ALNKAGTLTALSYPADDIKTLMTTARA-----SLTQSTTLFKSFMAMTAGNEHVRGLQKE 120 Query: 132 FFNPFSGD--YISLPVILQFVLTILWIFGVTTVINFSDGMDGLAGGLTAISAMTLFVVAL 189 F+ + + + + I+ + A Sbjct: 121 TEKSFARWHNDLEHQATWLESNQLSDFLTAPVQGSQNAFDVNFEAWQLEINHVLEAASAQ 180 Query: 190 AKG--QSASAMMAITLVGVTIAYLRYNKAPAKIFMGDAGATFLGYILAVIALDGAFKQAT 247 ++ Q ++ + ++ I K+ + + Sbjct: 181 SQRNYQISALVFISMIIVAAIYISSALWWTRKMIVQPLAIIGSHFDSIAAGNLARPIAVY 240 Query: 248 VLSLFIPILALGVPIFDNLFVVIKRFVQGKSIYQADATQVHYRLLKAGLNQKQVVAVLYL 307 + I A + L + +G ++ +Q A L Sbjct: 241 GRNEITAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQ 300 Query: 308 AS 309 + Sbjct: 301 TA 302 >SA0702 [M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase Length = 533 Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 17/282 (6%), Positives = 42/282 (14%), Gaps = 26/282 (9%) Query: 32 RLDFVDKPRKDVERKIHREPIPLTASYAIFIGFFITYLLFTRDFSLGTLALFIGGVLLLT 91 + F + + + A +L L Sbjct: 27 GMSFWAFRD---DLQRLNQVEQSNQQRAALAQTRAV-MLQASTALNKAGTLTALSYPADD 82 Query: 92 IGTIDDWYKTKGKDFPALPKFIVQIAAAILVFLSGNAFTGFFNPFSGDYISLPV------ 145 I T+ + + + A Sbjct: 83 IKTLMTTA-----RASLTQSTTLFKSFMAMT-----AGNEH----VRGLQKETEKSFARW 128 Query: 146 -ILQFVLTILWIFGVTTVINFSDGMDGLAGGLTAISAMTLFVVALAKGQSASAMMAITLV 204 + + A L + + + SA + + Sbjct: 129 HNDLEHQATWLESNQLSDFLTAPVQGSQNAFDVNFEAWQLEINHVLEAASAQSQRNYQIS 188 Query: 205 GVTIAYLRYNKAPAKIFMGDAGATFLGYILAVIALDGAFKQATVLSLFIPILALGVPIFD 264 + + A + LA+I A + I Sbjct: 189 ALVFISMIIVAAIYISSALWWTRKMIVQPLAIIGSHF-DSIAAGNLARPIAVYGRNEITA 247 Query: 265 NLFVVIKRFVQGKSIYQADATQVHYRLLKAGLNQKQVVAVLY 306 + + + + Sbjct: 248 IFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSS 289 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.332 0.147 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,299,212 Number of extensions: 889261 Number of successful extensions: 3465 Number of sequences better than 1.0e-05: 79 Number of HSP's gapped: 3314 Number of HSP's successfully gapped: 79 Length of query: 324 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 217 Effective length of database: 26,037,693 Effective search space: 5650179381 Effective search space used: 5650179381 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 116 (49.3 bits)